RGD:152086888 Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Variant: RGD:152086888 -  Homo sapiens

RGD ID: 152086888
RS ID: rs369161606
ClinVar ID: CV1571500
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC126862088  TRPM1  
Reference Nucleotide: G
Variant Nucleotide: C
Position
Assembly Chr Position
GRCh37 15 31,318,323
GRCh38 15 31,026,120
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_002420.6:c.3563+19C>G
NM_001252024.2:c.3629+19C>G
NM_001252020.2:c.3680+19C>G
NG_016453.2:g.140154C>G
More... 		03/25/2021 intron variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:TRPM1
Accession:NM_002420
Location:INTRON

Gene Symbol:TRPM1
Accession:NM_001252020
Location:INTRON

Gene Symbol:TRPM1
Accession:NM_001252024
Location:INTRON

Gene Symbol:TRPM1
Accession:NM_001252030
Location:INTRON

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV002131539 CLINVAR
dbSNP (RS) rs369161606 CLINVAR
MedGen C3661900 CLINVAR
NCBI Gene LOC126862088 CLINVAR
  TRPM1 CLINVAR
OMIM 603576 CLINVAR