RGD:15199754 Rat Genome Database

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Variant: RGD:15199754 -  Homo sapiens

RGD ID: 15199754
RS ID: rs143572747
ClinVar ID: CV773555
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: APOBEC3F  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 22 39,448,142
GRCh38 22 39,052,137
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_145298.6:c.787C>T
NC_000022.11:g.39052137C>T
NC_000022.10:g.39448142C>T
NM_145298.5:c.787C>T
More... 		07/13/2018 synonymous variant likely benign none provided

Variant Details
Variant Transcripts
Gene Symbol:APOBEC3F
Accession:NM_145298
Location:EXON
Amino Acid Prediction: L to L (synonymous)
Amino Acid Position: 263
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLP
AYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFV
YSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN
QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRS
LSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE*

Gene Symbol:APOBEC3F
Accession:XM_047441185
Location:EXON
Amino Acid Prediction: Y to Y (synonymous)
Amino Acid Position: 210
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLP
AYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFV
YSEGQPFMPWYKFDDNYAFLHRTLKEILRWILRPIVMQKGASSLGSVTTYCLLTQTTRSPGTHLGALAQSVQGRWPSSWP
GTAT*

Gene Symbol:APOBEC3F
Accession:XM_047441184
Location:EXON
Amino Acid Prediction: L to L (synonymous)
Amino Acid Position: 332
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLP
AYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEGERWRGQGSV
SGRNSMKDGWICNAMAGGVPGQPAGAGPALTATDSQETRPGSAGPGSGQSLTASCLFVSEFAYCWENFVYSEGQPFMPWY
KFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAE
RCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIM
GYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE*

Gene Symbol:APOBEC3F
Accession:NM_001006666
Location:INTRON

Gene Symbol:APOBEC3F
Accession:XM_017028642
Location:INTRON

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV000935191 CLINVAR
dbSNP (RS) rs143572747 CLINVAR
MedGen CN517202 CLINVAR
NCBI Gene APOBEC3F CLINVAR
OMIM 608993 CLINVAR