rs16838095 Rat Genome Database

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Variant: rs16838095 -  Homo sapiens

RGD ID: 150506344
RS ID: rs16838095
ClinVar ID: CV1213756
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: ALS2  
Reference Nucleotide: C
Variant Nucleotide: A
Position
Assembly Chr Position
GRCh37 2 202,575,965
GRCh38 2 201,711,242
JBrowse: View Region in Genome Browser (JBrowse)
Model



HGVS Name(s)
Last Evaluated
Molecular Consequence
Clinical Significance
Trait Synonyms
LRG_654t1:c.4005-134G>T
NM_020919.4:c.4005-134G>T
LRG_654:g.74931G>T
NG_008775.1:g.74931G>T
More... 		07/31/2018 intron variant benign none provided
Data has come from the GWAS Catalog   
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1607068_H GCST90162632 Verbal learning 28,909 European ancestry individuals A 0.0485 0.000001 6 rs16838095 4.826 memory performance (EFO:0004874)
 PMID:35974141

Gene Symbol:ALS2
Accession:XM_006712654
Location:INTRON

Gene Symbol:ALS2
Accession:XM_047445238
Location:INTRON

Gene Symbol:ALS2
Accession:XM_017004572
Location:INTRON

Gene Symbol:ALS2
Accession:NM_001135745
Location:INTRON

Gene Symbol:ALS2
Accession:NM_001410975
Location:INTRON

Gene Symbol:ALS2
Accession:XM_047445241
Location:INTRON

Gene Symbol:ALS2
Accession:NM_020919
Location:INTRON

Gene Symbol:ALS2
Accession:XM_006712655
Location:INTRON

Gene Symbol:ALS2
Accession:XM_017004570
Location:INTRON

Gene Symbol:ALS2
Accession:XM_047445224
Location:INTRON

.
PMID:25741868  



Database
Acc Id
Source(s)
ClinVar RCV001596013 CLINVAR
dbSNP (RS) rs16838095 CLINVAR
GWAS Catalog GCST90162632 GWAS Catalog
MedGen C3661900 CLINVAR
NCBI Gene ALS2 CLINVAR
OMIM 606352 CLINVAR