RGD:127280778 Rat Genome Database

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Pathways
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Variant: RGD:127280778 -  Homo sapiens

RGD ID: 127280778
RS ID: rs1557337560
ClinVar ID: CV1108055
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: IDS  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh37 X 148,564,288
GRCh38 X 149,482,757
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_001166550.4:c.1372T>C
NM_000202.8:c.1642T>C
NG_011900.3:g.27578T>C
NC_000023.11:g.149482757A>G
More... 		04/01/2021 synonymous variant likely benign Attenuated MPS (subtype; formerly known as mild MPS II); Heparan sulfate sulfatase deficiency; Hunter Syndrome; I2S deficiency; IDS deficiency; Iduronate 2-sulfatase deficiency; MPS 2; MPS 3A; MPS III A; Mucopoly-saccharidosis type 3A; Mucopolysaccharidosis type 2; Mucopolysaccharidosis type II; Mucopolysaccharidosis type IIIA (Sanfilippo A); Mucopolysaccharidosis with skin involvement; MUCOPOLYSACCHARIDOSIS, TYPE IIIA, ATTENUATED; Sanfilippo syndrome A; Severe MPS II; SIDS deficiency; SULFAMIDASE DEFICIENCY; Sulfoiduronate sulfatase deficiency
Disease Annotations     Click to see Annotation Detail View


Variant Details
Variant Transcripts
Gene Symbol:IDS
Accession:NM_001166550
Location:EXON
Amino Acid Prediction: L to L (synonymous)
Amino Acid Position: 458
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MPLRRRPDTTRLYDFNSYWRVHAGNFSTIPQYFKENGYVTMSVGKVFHPGISSNHTDDSPYSWSFPPYHPSSEKYENTKT
CRGPDGELHANLLCPVDVLDVPEGTLPDKQSTEQAIQLLEKMKTSASPFFLAVGYHKPHIPFRYPKEFQKLYPLENITLA
PDPEVPDGLPPVAYNPWMDIRQREDVQALNISVPYGPIPVDFQRKIRQSYFASVSYLDTQVGRLLSALDDLQLANSTIIA
FTSDHGWALGEHGEWAKYSNFDVATHVPLIFYVPGRTASLPEAGEKLFPYLDPFDSASQLMEPGRQSMDLVELVSLFPTL
AGLAGLQVPPRCPVPSFHVELCREGKNLLKHFRFRDLEEDPYLPGNPRELIAYSQYPRPSDIPQWNSDKPSLKDIKIMGY
SIRTIDYRYTVWVGFNPDEFLANFSDIHAGELYFVDSDPLQDHNMYNDSQGGDLFQLLMP*

Gene Symbol:IDS
Accession:NM_000202
Location:EXON
Amino Acid Prediction: L to L (synonymous)
Amino Acid Position: 548
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MPPPRTGRGLLWLGLVLSSVCVALGSETQANSTTDALNVLLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSLLFQNAFAQ
QAVCAPSRVSFLTGRRPDTTRLYDFNSYWRVHAGNFSTIPQYFKENGYVTMSVGKVFHPGISSNHTDDSPYSWSFPPYHP
SSEKYENTKTCRGPDGELHANLLCPVDVLDVPEGTLPDKQSTEQAIQLLEKMKTSASPFFLAVGYHKPHIPFRYPKEFQK
LYPLENITLAPDPEVPDGLPPVAYNPWMDIRQREDVQALNISVPYGPIPVDFQRKIRQSYFASVSYLDTQVGRLLSALDD
LQLANSTIIAFTSDHGWALGEHGEWAKYSNFDVATHVPLIFYVPGRTASLPEAGEKLFPYLDPFDSASQLMEPGRQSMDL
VELVSLFPTLAGLAGLQVPPRCPVPSFHVELCREGKNLLKHFRFRDLEEDPYLPGNPRELIAYSQYPRPSDIPQWNSDKP
SLKDIKIMGYSIRTIDYRYTVWVGFNPDEFLANFSDIHAGELYFVDSDPLQDHNMYNDSQGGDLFQLLMP*

Gene Symbol:IDS
Accession:NM_006123
Location:INTRON

Gene Symbol:IDS
Accession:NR_104128
Location:INTRON;NON-CODING

Variant Samples
Additional References at PubMed
PMID:28492532  


Additional Information

Database Acc Id Source(s)
ClinVar RCV001446722 CLINVAR
  RCV001826267 CLINVAR
dbSNP (RS) rs1557337560 CLINVAR
MedGen C0026705 CLINVAR
  C0086647 CLINVAR
NCBI Gene IDS CLINVAR
OMIM 252900 CLINVAR
  300823 CLINVAR
  309900 CLINVAR
SNOMED CT 41572006 CLINVAR
  70737009 CLINVAR