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Strain Registration

Strain: SS-Lssem2Mcwi

Symbol: SS-Lssem2Mcwi
Strain: SS-Lssem2
Substrain: Mcwi
RGD ID: 6484714
Citation ID: RRID:RGD_6484714
Ontology ID: RS:0003283
Alleles: Lssem2Mcwi
Also Known As: SS-Lssem2Mcwi; SS-Lss^[em2Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CCCATCCACTGGTTCtctgggGAAGAAGAGAAGGAAAAG into SS/JrHsdMcwi rat embryos. The resulting mutation is a net 12-bp deletion in exon 2.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22012,118,435 - 12,118,448RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02012,844,522 - 12,870,474RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02015,000,298 - 15,338,473RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42012,507,575 - 12,534,612RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Lssem2Mcwi-var1 chr20 12118435 12118448 TCATTATGGAGCCG GTGG delins mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-03 SS-Lssem2Mcwi    SS-Lssem2Mcwi    Symbol updated 68687 APPROVED
2014-04-03 SS-Lssem2Mcwi    SS-Lssem2Mcwi    Symbol updated 68687 APPROVED
2014-04-03 SS-Lssem2Mcwi    SS-Lssem2Mcwi    Name updated 68913 APPROVED
2014-04-03 SS-Lssem2Mcwi    SS-Lssem2Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Lssem2Mcwi    SS-Lssem2Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Lssem2Mcwi    SS-Lssem2Mcwi    Name updated 68913 APPROVED