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Strain Registration

Strain: DA.PVG.1AV1-(D4Got211-D4Mit12)/Kini

Symbol: DA.PVG.1AV1-(D4Got211-D4Mit12)/Kini
Strain: DA.PVG.1AV1-(D4Got211-D4Mit12)
Substrain: Kini
RGD ID: 2317599
Citation ID: RRID:RGD_2317599
Ontology ID: RS:0002389
Also Known As: DA.PVG.1AV1-(OT40.07-D4Mit12)/Kini; R21; DA.PVG.1AV1-(D4Got211-D4Mit12)/Kini
Type: congenic
Available Source: Not Available
Origination: Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden
Description: Congenic substrain established by intercrossing DA.PVG.1AV1-(D4Rat155-Spr) with parental DA/Kini
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8481,776,043 - 81,776,229RGD_MAPPER_PIPELINE
mRatBN7.2480,445,377 - 103,194,984RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0481,136,696 - 99,067,150RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04145,804,154 - 163,844,298RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4479,604,076 - 104,416,171RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. The calcitonin receptor gene is a candidate for regulation of susceptibility to herpes simplex type 1 neuronal infection leading to encephalitis in rat. Abdelmagid N, etal., PLoS Pathog. 2012;8(6):e1002753. doi: 10.1371/journal.ppat.1002753. Epub 2012 Jun 28.
2. Multiple loci comprising immune-related genes regulate experimental neuroinflammation. Marta M, etal., Genes Immun. 2010 Jan;11(1):21-36. Epub 2009 Aug 13.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Got211)
Rat AssemblyChrPosition (strand)Source
GRCr8481,776,043 - 81,776,229 (+)Marker Load Pipeline
mRatBN7.2480,445,377 - 80,445,563 (+)MAPPER
Rnor_6.0481,136,696 - 81,136,881NCBI
Rnor_5.04145,804,154 - 145,804,339UniSTS
RGSC_v3.4479,604,076 - 79,604,261UniSTS
Celera475,345,969 - 75,346,155UniSTS
Cytogenetic Map4 RGD

Flank 2 / 1 (D4Mit12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24103,194,805 - 103,194,984 (+)MAPPER
Rnor_6.0499,066,972 - 99,067,150NCBI
Rnor_5.04163,844,120 - 163,844,298UniSTS
RGSC_v3.44104,415,992 - 104,416,171RGD
RGSC_v3.44104,415,993 - 104,416,171UniSTS
RGSC_v3.14104,660,473 - 104,660,652RGD
Celera492,370,739 - 92,370,917UniSTS
SHRSP x BN Map448.75UniSTS
SHRSP x BN Map448.75RGD
FHH x ACI Map460.18RGD
Cytogenetic Map4q32UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease When infected in the whiskers area with 2X106 PFU of HSV-1, incidence of Herpes simplex encephalitis (HSE) similar to DA/Kini were observed 7240516
strain_other contains Eae25, Eae26 and part of Eae27 2317591

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 DA.PVG.1AV1-(D4Got211-D4Mit12)/Kini    DA.PVG.1AV1-(D4Got211-D4Mit12)/Kini    Name updated 68913 APPROVED
2013-08-28 DA.PVG.1AV1-(D4Got211-D4Mit12)/Kini    DA.PVG.1AV1-(D4Got211-D4Mit12)/Kini    Name updated 68913 APPROVED