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Strain Registration

General

Strain: DA.PVG.1AV1-(D8Rat24-D8Got145)

Symbol:

DA.PVG.1AV1-(D8Rat24-D8Got145)

Strain:

DA.PVG.1AV1-(D8Rat24-D8Got145)

RGD ID:

2317201

Citation ID:

RRID:RGD_2317201

Ontology ID:

RS:0002382

Also Known As:

DA.PVG.1AV1-(D8Rat24-D8Got145); DA.PVGav1-Vra1-R3; DA.PVG^av1-Vra1-R3

Type:

congenic

Available Source:

Not Available

Origination:

Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden

Description:

DA.PVG.1AV1-(D8Rat146-D8Got145) was backcrossed to the recipient DA for 9 generations to create this congenic with less than 0.1% genome outside the desired locus

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	87,018,553 - 87,018,707	RGD_MAPPER_PIPELINE
mRatBN7.2	8	78,138,158 - 87,043,114	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	8	84,569,165 - 93,746,162	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	8	84,140,683 - 93,261,060	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	8	82,246,890 - 91,329,867	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

neurodegenerative disease (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

motor neuron degeneration (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	Fine mapping of gene regions regulating neurodegeneration.	Swanberg M, etal., PLoS One. 2009 Jun 15;4(6):e5906.

Region

Position Markers

Flank 1 / 1 (D8Rat24)

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	87,018,553 - 87,018,707 (+)	Marker Load Pipeline
mRatBN7.2	8	78,138,158 - 78,138,314 (+)	MAPPER
Rnor_6.0	8	84,569,165 - 84,569,318	NCBI
Rnor_5.0	8	84,140,683 - 84,140,836	UniSTS
RGSC_v3.4	8	82,246,890 - 82,247,243	RGD
RGSC_v3.4	8	82,247,051 - 82,247,204	UniSTS
RGSC_v3.1	8	82,266,105 - 82,266,258	RGD
Celera	8	77,890,637 - 77,890,790	UniSTS
RH 3.4 Map	8	897.39	UniSTS
RH 3.4 Map	8	897.39	RGD
RH 2.0 Map	8	767.5	RGD
SHRSP x BN Map	8	45.61	RGD
Cytogenetic Map	8	q24-q31	UniSTS

Flank 2 / 1 (D8Got145)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	87,042,935 - 87,043,114 (+)	MAPPER
Rnor_6.0	8	93,745,984 - 93,746,162	NCBI
Rnor_5.0	8	93,260,882 - 93,261,060	UniSTS
RGSC_v3.4	8	91,329,688 - 91,329,867	RGD
RGSC_v3.4	8	91,329,689 - 91,329,867	UniSTS
RGSC_v3.1	8	91,349,144 - 91,349,322	RGD
Celera	8	86,648,616 - 86,648,794	UniSTS
RH 3.4 Map	8	997.9	UniSTS
RH 3.4 Map	8	997.9	RGD
RH 2.0 Map	8	793.4	RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: DA.PVG.1AV1-(D8Rat24-D8Got145)

Mammalian Phenotype