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Strain Registration

Strain: WKY.SHRSP-(D1Mgh5-D1Arb21)(D3Rat36-D3Rat144)(D4Mgh7-D4Rat68)/Izm

Symbol: WKY.SHRSP-(D1Mgh5-D1Arb21)(D3Rat36-D3Rat144)(D4Mgh7-D4Rat68)/Izm
Strain: WKY.SHRSP-(D1Mgh5-D1Arb21)(D3Rat36-D3Rat144)(D4Mgh7-D4Rat68)
Substrain: Izm
RGD ID: 12879428
Citation ID: RRID:RGD_12879428
Ontology ID: RS:0004413
Also Known As: NBRP Rat No: 0852; WKYpch1_3_4.2; WKY.SHRSP-(D1Mgh5-D1Arb21)(D3Rat36-D3Rat144)(D4Mgh7-D4Rat68)/Izm
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: A double congenic strain bade by introducing segments of chromosome 1, 3, and 4 from SHRSP/Izm into WKY/Izm. This strain was established by mating between WKY.SHRSP-(D1Mgh5-D1Arb21)(D3Mgh16-D3Rat144)/Izm(NBRP Rat No:0713)and WKY.SHRSP-(D1Mgh5-D1Arb21) (D4Mgh7-D4Rat68)/IzmCNBRP Rat No:0714). This strain was established and is maintained in Shimane University.
Last Known Status: Cryopreserved Embryo (as of 2017-04-19)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2178,430,536 - 182,418,476RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.2380,367,329 - 149,313,851RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.24138,503,169 - 168,069,246RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0383,300,114 - 156,656,443RGD_MAPPER_PIPELINERnor6.0
Rnor_6.0179,689,548 - 199,254,774RGD_MAPPER_PIPELINERnor6.0
Rnor_6.04136,351,734 - 168,998,263RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0389,999,731 - 162,886,090RGD_MAPPER_PIPELINERnor5.0
Rnor_5.0180,946,174 - 206,277,202RGD_MAPPER_PIPELINERnor5.0
Rnor_5.04200,825,021 - 233,267,140RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4178,134,304 - 187,092,492RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.4378,808,731 - 151,449,116RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.44172,169,471 - 172,169,650RGD_MAPPER_PIPELINERGSC3.4






References

Region

Position Markers

Flank 1 / 1 (D1Mgh5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2178,430,536 - 78,430,678 (+)MAPPER
Rnor_6.0179,689,548 - 79,689,689NCBI
Rnor_5.0180,946,174 - 80,946,315UniSTS
RGSC_v3.4178,134,305 - 78,134,446UniSTS
RGSC_v3.4178,134,304 - 78,134,446RGD
RGSC_v3.1178,212,415 - 78,212,557RGD
Celera172,898,184 - 72,898,325UniSTS
RH 3.4 Map1791.5UniSTS
RH 3.4 Map1791.5RGD
RH 2.0 Map1501.0RGD
SHRSP x BN Map140.2499RGD
FHH x ACI Map140.1RGD
Cytogenetic Map1q21UniSTS

Flank 2 / 1 (D1Arb21)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,418,219 - 182,418,476 (+)MAPPER
Rnor_6.01199,254,518 - 199,254,774NCBI
Rnor_5.01206,276,946 - 206,277,202UniSTS
RGSC_v3.41187,092,235 - 187,092,492RGD
RGSC_v3.41187,092,236 - 187,092,492UniSTS
RGSC_v3.11187,242,116 - 187,242,373RGD
Celera1180,069,264 - 180,069,520UniSTS
FHH x ACI Map185.51UniSTS
FHH x ACI Map185.51RGD
Cytogenetic Map1q36UniSTS

Flank 1 / 2 (D3Rat36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2380,367,329 - 80,367,507 (+)MAPPER
Rnor_6.0383,300,114 - 83,300,291NCBI
Rnor_5.0389,999,731 - 89,999,908UniSTS
RGSC_v3.4378,808,864 - 78,809,041UniSTS
RGSC_v3.4378,808,731 - 78,809,051RGD
RGSC_v3.1378,705,292 - 78,705,469RGD
Celera379,561,691 - 79,561,868UniSTS
RH 3.4 Map3691.6RGD
RH 3.4 Map3691.6UniSTS
RH 2.0 Map3457.9RGD
SHRSP x BN Map342.7898RGD
Cytogenetic Map3q31UniSTS

Flank 2 / 2 (D3Rat144)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,313,702 - 149,313,851 (+)MAPPER
Rnor_6.03156,656,295 - 156,656,443NCBI
Rnor_5.03162,885,942 - 162,886,090UniSTS
RGSC_v3.43151,448,967 - 151,449,116RGD
RGSC_v3.43151,448,968 - 151,449,116UniSTS
RGSC_v3.13151,355,003 - 151,355,152RGD
Celera3147,988,297 - 147,988,445UniSTS
SHRSP x BN Map375.5299RGD
SHRSP x BN Map375.5299UniSTS
Cytogenetic Map3q42UniSTS

Flank 1 / 3 (D4Mgh7)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24138,503,169 - 138,503,340 (+)MAPPER
Rnor_6.04136,351,734 - 136,351,904NCBI
Rnor_6.04137,666,258 - 137,666,428NCBI
Rnor_5.04200,825,021 - 200,825,191UniSTS
Rnor_5.04202,136,403 - 202,136,573UniSTS
Celera4127,232,095 - 127,232,265UniSTS
RH 3.4 Map4856.5RGD
RH 3.4 Map4856.5UniSTS
RH 2.0 Map4920.4RGD
SHRSP x BN Map463.48RGD
Cytogenetic Map4 RGD

Flank 2 / 3 (D4Rat68)
Rat AssemblyChrPosition (strand)Source
mRatBN7.24168,068,179 - 168,068,358 (+)MAPPER
mRatBN7.24168,068,179 - 168,069,246 (+)MAPPER
Rnor_6.04168,996,642 - 168,998,263NCBI
Rnor_6.04168,996,642 - 168,996,820NCBI
Rnor_5.04233,266,962 - 233,267,140UniSTS
RGSC_v3.44172,169,472 - 172,169,650UniSTS
RGSC_v3.44172,169,471 - 172,169,650RGD
RGSC_v3.14172,414,408 - 172,414,586RGD
Celera4156,666,511 - 156,666,677UniSTS
RH 3.4 Map41021.2UniSTS
RH 3.4 Map41021.2RGD
SHRSP x BN Map487.2799RGD
SHRSP x BN Map487.2799UniSTS
FHH x ACI Map4107.8399RGD
Cytogenetic Map4q43UniSTS

Additional Information