rs539958 Rat Genome Database

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Variant: rs539958 -  Homo sapiens

RGD ID: 151316297
RS ID: rs539958
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SLC22A3  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh38 6 160,351,810
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait
body fat mass  (IAGP)
body height  (IAGP)

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1304855_H GCST011342 Body fat percentage and triglycerides (pairwise) 268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals T 0.4831 2E-12 11.699 rs539958 N/A triglyceride measurement (EFO:0004530)
body fat percentage (EFO:0007800)
 PMID:33619380
GWAS1305186_H GCST011343 Body fat percentage and LDL-C (pairwise) 263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals T 0.4831 5E-10 9.302 rs539958 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
body fat percentage (EFO:0007800)
 PMID:33619380
GWAS1305501_H GCST011331 Body mass index and systole blood pressure (pairwise) 472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals T 0.4831 7E-10 9.155 rs539958 N/A systolic blood pressure (EFO:0006335)
body mass index (EFO:0004340)
 PMID:33619380
GWAS1305644_H GCST011330 Body mass index and coronary artery disease (pairwise) 464,176 European ancestry individuals, 59,353 East Asian, South Asian, Hispanic and African American ancestry individuals T 0.4831 3E-10 9.523 rs539958 N/A body mass index (EFO:0004340)
coronary artery disease (EFO:0001645)
 PMID:33619380
GWAS1308447_H GCST011335 Body mass index and LDL-C (pairwise) 495,344 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals T 0.4831 2E-11 10.699 rs539958 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
body mass index (EFO:0004340)
 PMID:33619380
GWAS1308453_H GCST011334 Body mass index and triglycerides (pairwise) 500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals T 0.4831 1E-14 14 rs539958 N/A triglyceride measurement (EFO:0004530)
body mass index (EFO:0004340)
 PMID:33619380
GWAS1449320_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals T 0.4755 2E-197 196.699 rs539958 0.0186 obsolete_body height (EFO:0004339)
 PMID:36224396

Variant Details
Variant Transcripts
Gene Symbol:SLC22A3
Accession:XM_017011203
Location:5UTRS;INTRON

Gene Symbol:SLC22A3
Accession:XM_011536076
Location:5UTRS;INTRON

Gene Symbol:SLC22A3
Accession:XM_005267106
Location:INTRON

Gene Symbol:SLC22A3
Accession:XM_047419262
Location:INTRON

Gene Symbol:SLC22A3
Accession:XM_005267107
Location:INTRON

Gene Symbol:SLC22A3
Accession:XM_011536075
Location:INTRON

Gene Symbol:SLC22A3
Accession:NM_021977
Location:INTRON

Gene Symbol:SLC22A3
Accession:XM_047419261
Location:INTRON

Variant Samples