GWAS1792023_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1792023_H (bone density QTL GWAS1792023 (human)) Homo sapiens

Symbol: GWAS1792023_H
Name: bone density QTL GWAS1792023 (human)
RGD ID: 598072724
Trait: bone density
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1792023_HHumanbone density  IAGPrs6426749405850206 GWAS_CATALOGPMID:37500982

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs6426749)
Human AssemblyChrPosition (strand)Source
GRCh38122,384,980 - 22,384,981RGD_MAPPER_PIPELINE



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1792023_H GCST90321118 Bone mineral density mean 141,261 European ancestry individuals ? NR 1E-10 10 rs6426749 N/A bone density (OBA:1000110)
 PMID:37500982
GWAS1700830_H GCST000495 Bone mineral density (hip) 19,195 European ancestry individuals C 0.17 9E-8 7.046 rs6426749 0.08 bone density (OBA:1000110)
 PMID:19801982
GWAS1176112_H GCST90002372 Red cell distribution width 563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.820099 2E-28 27.699 rs6426749 N/A Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1176887_H GCST90002369 Red cell distribution width 531,774 European ancestry individuals G 0.822695 5E-30 29.302 rs6426749 0.027898 Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS773710_H GCST007691 Femoral neck bone mineral density Up to 32,961 European and East Asian ancestry individuals C 0.17 7E-57 56.155 rs6426749 0.11 femoral neck bone mineral density (EFO:0007785)
 PMID:22504420
GWAS1324871_H GCST006422 Fractures 37,857 European or East Asian ancestry cases, 227,116 European or East Asian ancestry controls G 0.8288 2E-7 6.699 rs6426749 1.05 bone fracture (EFO:0003931)
 PMID:30158200
GWAS1795809_H GCST90281214 High fluorescent percentage of reticulocytes 37,931 European ancestry individuals C 0.1786 2E-10 9.699 rs6426749 0.0600242 erythrocyte attribute (OBA:2045276)
 PMID:37596262
GWAS1795832_H GCST90281216 Low fluorescent percentage of reticulocytes 39,470 European ancestry individuals C 0.1792 6E-11 10.222 rs6426749 0.0596343 erythrocyte attribute (OBA:2045276)
 PMID:37596262
Database
Acc Id
Source(s)
GWAS Catalog GCST90321118 GWAS Catalog

Note Type Note Reference