GWAS1773425_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1773425_H (erythrocyte volume QTL GWAS1773425 (human)) Homo sapiens

Symbol: GWAS1773425_H
Name: erythrocyte volume QTL GWAS1773425 (human)
RGD ID: 598054126
Trait: erythrocyte volume
LOD Score: Not Available
P Value: 4.0E-19
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1773425_HHumanerythrocyte volume  IAGPrs1175550405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1175550)
Human AssemblyChrPosition (strand)Source
GRCh3813,774,964 - 3,774,965RGD_MAPPER_PIPELINE



1 to 20 of 55 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1773425_H GCST90479677 mean corpuscular volume (MCV, minimum, inv-norm transformed) 114,863 African American or Afro-Caribbean individuals, 55,796 Hispanic or Latin American individuals, 5,951 East Asian ancestry individuals, 407,355 European ancestry individuals A 0.7196 4E-19 18.398 rs1175550 0.03417 erythrocyte volume (OBA:0003460)
 PMID:39024449
GWAS1117948_H GCST004601 Red blood cell count 172,952 European ancestry individuals G 0.2321 9E-13 12.046 rs1175550 0.03013325 erythrocyte count (EFO:0004305)
 PMID:27863252
GWAS1637956_H GCST90479669 mean corpuscular hemoglobin concentration (MCHC, maximum, inv-norm transformed) 114,857 African American or Afro-Caribbean individuals, 55,793 Hispanic or Latin American individuals, 5,943 East Asian ancestry individuals, 407,343 European ancestry individuals A 0.7196 3E-105 104.523 rs1175550 0.0735 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1640133_H GCST90479671 mean corpuscular hemoglobin concentration (MCHC, minimum, inv-norm transformed) 114,841 African American or Afro-Caribbean individuals, 55,798 Hispanic or Latin American individuals, 5,943 East Asian ancestry individuals, 407,301 European ancestry individuals A 0.7197 1E-77 77 rs1175550 0.06002 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1640496_H GCST90479670 mean corpuscular hemoglobin concentration (MCHC, mean, inv-norm transformed) 114,851 African American or Afro-Caribbean individuals, 55,797 Hispanic or Latin American individuals, 5,942 East Asian ancestry individuals, 407,345 European ancestry individuals A 0.7196 5E-117 116.302 rs1175550 0.0792 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
GWAS1124450_H GCST006804 Red cell distribution width 116,666 British ancestry individuals G NR 2E-16 15.699 rs1175550 0.0366979 Red cell distribution width (EFO:0009188)
 PMID:28957414
GWAS595016_H GCST90002314 Hemoglobin concentration 746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.238035 4E-38 37.398 rs1175550 N/A hemoglobin measurement (EFO:0004509)
 PMID:32888493
GWAS597139_H GCST90002310 Hemoglobin concentration 563,946 European ancestry individuals G 0.232052 1E-40 40 rs1175550 0.030902 hemoglobin measurement (EFO:0004509)
 PMID:32888493
GWAS1139182_H GCST007069 Red blood cell count approximately 445,000 European ancestry individuals ? NR 2E-30 29.699 rs1175550 N/A erythrocyte count (EFO:0004305)
 PMID:30595370
GWAS599913_H GCST004605 Mean corpuscular hemoglobin concentration 172,851 European ancestry individuals G 0.2321 1E-43 43 rs1175550 0.05686661 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:27863252
GWAS606626_H GCST004611 High light scatter reticulocyte count 170,761 European ancestry individuals G 0.2319 1E-49 49 rs1175550 0.06299945 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS613252_H GCST004612 High light scatter reticulocyte percentage of red cells 170,763 European ancestry individuals G 0.2319 2E-43 42.699 rs1175550 0.05865731 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS613799_H GCST004622 Reticulocyte count 170,641 European ancestry individuals G 0.2319 2E-42 41.699 rs1175550 0.05803529 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS617113_H GCST004619 Reticulocyte fraction of red cells 170,690 European ancestry individuals G 0.2319 3E-34 33.523 rs1175550 0.05187558 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS621931_H GCST004628 Immature fraction of reticulocytes 170,548 European ancestry individuals G 0.2319 3E-27 26.523 rs1175550 0.04553773 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS634661_H GCST90002384 Hemoglobin 408,112 British individuals G 0.231502 2E-33 32.699 rs1175550 0.031965658 hemoglobin measurement (EFO:0004509)
 PMID:32888494
GWAS636407_H GCST90002332 Mean corpuscular hemoglobin concentration 642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.238277 5E-119 118.302 rs1175550 N/A mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:32888493
GWAS637654_H GCST90002387 Immature fraction of reticulocytes 408,112 British individuals G 0.231553 1E-38 38 rs1175550 0.0348624 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS638339_H GCST90002385 High light scatter reticulocyte count 408,112 British individuals G 0.231517 8E-85 84.097 rs1175550 0.05204257 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS642588_H GCST90002386 High light scatter reticulocyte percentage of red cells 408,112 British individuals G 0.231511 5E-72 71.302 rs1175550 0.047862276 reticulocyte measurement (EFO:0010700)
 PMID:32888494
1 to 20 of 55 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90479677 GWAS Catalog

Note Type Note Reference