GWAS1672875_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1672875_H (osteitis deformans QTL GWAS1672875 (human)) Homo sapiens

Symbol: GWAS1672875_H
Name: osteitis deformans QTL GWAS1672875 (human)
RGD ID: 597616015
Trait: osteitis deformans
LOD Score: Not Available
P Value: 1.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381013,126,429 - 13,126,430RGD_MAPPER_PIPELINEGRCh38
GRCh371013,168,429 - 13,168,430RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1672875_HHumanPaget's disease of bone  IAGPrs113861118405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1672875_HHumanPaget disease of bone  IAGPrs113861118405850206 GWAS_CATALOGPMID:39024449
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1672875_HHumanosteitis deformans  IAGPrs113861118405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736202OPTNoptineurin101310008213138308Human


Peak: (rs113861118)
Human AssemblyChrPosition (strand)Source
GRCh381013,126,429 - 13,126,430RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597616015GWAS1672875_Hosteitis deformans QTL GWAS1672875 (human)1e-13osteitis deformans101312642913126430Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1672875_H GCST90480525 Osteitis deformans [Paget's disease of bone] (PheCode 731.1) 373 African American or Afro-Caribbean cases, 121,472 African American or Afro-Caribbean controls, 495 European ancestry cases, 450,711 European ancestry controls C 0.7504 1E-13 13 rs113861118 0.4182 osteitis deformans (EFO:0004261)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90480525 GWAS Catalog

Note Type Note Reference