GWAS1662177_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1662177_H (type 2 diabetes mellitus QTL GWAS1662177 (human)) Homo sapiens

Symbol: GWAS1662177_H
Name: type 2 diabetes mellitus QTL GWAS1662177 (human)
RGD ID: 597605317
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 6.0E-34
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812132,493,112 - 132,493,113RGD_MAPPER_PIPELINEGRCh38
GRCh3712133,069,698 - 133,069,699RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1662177_HHumantype 2 diabetes mellitus  IAGPrs12811407405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:38374256


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2303695FBRSL1fibrosin like 112132490151132585188Human


Peak: (rs12811407)
Human AssemblyChrPosition (strand)Source
GRCh3812132,493,112 - 132,493,113RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597270233GWAS1366307_Htype 2 diabetes mellitus QTL GWAS1366307 (human)1e-11type 2 diabetes mellitus12132493112132493113Human
597269119GWAS1365193_Htype 2 diabetes mellitus QTL GWAS1365193 (human)7e-15type 2 diabetes mellitus12132493112132493113Human
597035935GWAS1132009_Htype 2 diabetes mellitus QTL GWAS1132009 (human)2e-12type 2 diabetes mellitus12132493112132493113Human
597605317GWAS1662177_Htype 2 diabetes mellitus QTL GWAS1662177 (human)6e-34type 2 diabetes mellitus12132493112132493113Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1662177_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls A 0.2732 6E-34 33.222 rs12811407 N/A PMID:38374256
GWAS1132009_H GCST009379 Type 2 diabetes 74,124 European ancestry cases, 824,006 European ancestry controls A 0.3305 2E-12 11.699 rs12811407 1.05 PMID:30297969
GWAS1365193_H GCST90132183 Type 2 diabetes 251,740 European ancestry individuals, 139,705 East Asian ancestry individuals, 40,737 South Asian ancestry individuals, 27,417 Hispanic individuals, 30,167 African American individuals, 2,426 Zulu ancestry individuals A NR 7E-15 14.155 rs12811407 1.05 PMID:35551307
GWAS1366307_H GCST90132184 Type 2 diabetes 251,740 European ancestry individuals A 0.332 1E-11 11 rs12811407 0.048 PMID:35551307
Database
Acc Id
Source(s)
GWAS Catalog GCST90492734 GWAS Catalog

Note Type Note Reference