GWAS1659471_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1659471_H (type 2 diabetes mellitus QTL GWAS1659471 (human)) Homo sapiens

Symbol: GWAS1659471_H
Name: type 2 diabetes mellitus QTL GWAS1659471 (human)
RGD ID: 597602611
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,273,147 - 161,273,148RGD_MAPPER_PIPELINEGRCh38
GRCh376161,694,179 - 161,694,180RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1659471_HHumantype 2 diabetes mellitus  IAGPrs1321850405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:38374256


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1354001AGPAT41-acylglycerol-3-phosphate O-acyltransferase 46161129967161274061Human


Peak: (rs1321850)
Human AssemblyChrPosition (strand)Source
GRCh386161,273,147 - 161,273,148RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
597602611GWAS1659471_Htype 2 diabetes mellitus QTL GWAS1659471 (human)3e-08type 2 diabetes mellitus6161273147161273148Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1659471_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls G 0.31364 3E-8 7.523 rs1321850 N/A PMID:38374256
Database
Acc Id
Source(s)
GWAS Catalog GCST90492734 GWAS Catalog

Note Type Note Reference