GWAS1646720_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1646720_H (diabetic neuropathy QTL GWAS1646720 (human)) Homo sapiens

Symbol: GWAS1646720_H
Name: diabetic neuropathy QTL GWAS1646720 (human)
RGD ID: 597589860
Trait: diabetic neuropathy
LOD Score: Not Available
P Value: 2.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38715,026,420 - 15,026,421RGD_MAPPER_PIPELINEGRCh38
GRCh37715,066,045 - 15,066,046RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1646720_HHumandiabetic autonomic neuropathy  IAGPrs1990379405850206 GWAS_CATALOGPMID:39024449
GWAS1646720_HHumandiabetic neuropathy  IAGPrs1990379405850206 GWAS_CATALOGPMID:39024449
GWAS1646720_HHumandiabetic polyneuropathy  IAGPrs1990379405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1646720_HHumandiabetic neuropathy  IAGPrs1990379405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs1990379)
Human AssemblyChrPosition (strand)Source
GRCh38715,026,420 - 15,026,421RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human
1643247BW130_HBody Weight QTL 130 (human)1.280.008Body weightbody mass index7117453493Human
1643391BW322_HBody weight QTL 322 (human)2.690.0002Body fat amount7122435431Human
597588376GWAS1645236_Hdiabetic neuropathy QTL GWAS1645236 (human)2e-17diabetic neuropathy71502642015026421Human
597589860GWAS1646720_Hdiabetic neuropathy QTL GWAS1646720 (human)2e-14diabetic neuropathy71502642015026421Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1646720_H GCST90479883 Type 2 diabetes with neurological manifestations (PheCode 250.24) 16,638 African American or Afro-Caribbean cases, 99,303 African American or Afro-Caribbean controls, 7,320 Hispanic or Latin American cases, 50,236 Hispanic or Latin American controls, 443 East Asian ancestry cases, 6,209 East Asian ancestry controls, 59,205 European ancestry cases, 375,439 European ancestry controls T 0.457 2E-14 13.699 rs1990379 0.04953 diabetic neuropathy (EFO:1000783)
 PMID:39024449
GWAS1645236_H GCST90475676 Type 2 diabetes with neurological manifestations (PheCode 250.24) 59,205 European ancestry cases, 375,439 European ancestry controls T 0.464 2E-17 16.699 rs1990379 0.05045 diabetic neuropathy (EFO:1000783)
 PMID:39024449
GWAS1741829_H GCST011587 Fasting blood glucose 18,122 Han Chinese ancestry individuals A 0.69 9E-14 13.046 rs1990379 0.084 obsolete_fasting blood glucose measurement (EFO:0004465)
 PMID:33842983
Database
Acc Id
Source(s)
GWAS Catalog GCST90479883 GWAS Catalog

Note Type Note Reference