GWAS1646482_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1646482_H (diabetic neuropathy QTL GWAS1646482 (human)) Homo sapiens

Symbol: GWAS1646482_H
Name: diabetic neuropathy QTL GWAS1646482 (human)
RGD ID: 597589622
Trait: diabetic neuropathy
LOD Score: Not Available
P Value: 5.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381213,985,913 - 213,985,914RGD_MAPPER_PIPELINEGRCh38
GRCh371214,159,256 - 214,159,257RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1646482_HHumandiabetic autonomic neuropathy  IAGPrs340874405850206 GWAS_CATALOGPMID:39024449
GWAS1646482_HHumandiabetic neuropathy  IAGPrs340874405850206 GWAS_CATALOGPMID:39024449
GWAS1646482_HHumandiabetic polyneuropathy  IAGPrs340874405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1646482_HHumandiabetic neuropathy  IAGPrs340874405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
5686964PROX1-AS1PROX1 antisense RNA 11213819641213986153Human
1315763PROX1prospero homeobox 11213983151214041510Human


Peak: (rs340874)
Human AssemblyChrPosition (strand)Source
GRCh381213,985,913 - 213,985,914RGD_MAPPER_PIPELINE


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597605119GWAS1661979_Htype 2 diabetes mellitus QTL GWAS1661979 (human)1e-17type 2 diabetes mellitus1213985913213985914Human
597577949GWAS1634809_HHOMA-B QTL GWAS1634809 (human)0.000005HOMA-BHomeostatic Model Assessment of Beta cell function (CMO:0003211)1213985913213985914Human
597589210GWAS1646070_Htype 2 diabetes mellitus QTL GWAS1646070 (human)4e-17type 2 diabetes mellitus1213985913213985914Human
597588602GWAS1645462_Hglucose measurement QTL GWAS1645462 (human)1e-32glucose measurementblood glucose level (CMO:0000046)1213985913213985914Human
597577787GWAS1634647_Hpsoriasis, type 2 diabetes mellitus QTL GWAS1634647 (human)3e-08psoriasis, type 2 diabetes mellitus1213985913213985914Human
597589622GWAS1646482_Hdiabetic neuropathy QTL GWAS1646482 (human)5e-13diabetic neuropathy1213985913213985914Human
597585940GWAS1642800_Htype 2 diabetes mellitus QTL GWAS1642800 (human)1e-70type 2 diabetes mellitus1213985913213985914Human
597577746GWAS1634606_Htype 2 diabetes mellitus QTL GWAS1634606 (human)8e-18type 2 diabetes mellitus1213985913213985914Human
597605264GWAS1662124_Htype 2 diabetes mellitus QTL GWAS1662124 (human)1e-18type 2 diabetes mellitus1213985913213985914Human
597590032GWAS1646892_Htype 2 diabetes mellitus QTL GWAS1646892 (human)1e-16type 2 diabetes mellitus1213985913213985914Human

1 to 10 of 24 rows


1 to 20 of 29 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1646482_H GCST90479883 Type 2 diabetes with neurological manifestations (PheCode 250.24) 16,638 African American or Afro-Caribbean cases, 99,303 African American or Afro-Caribbean controls, 7,320 Hispanic or Latin American cases, 50,236 Hispanic or Latin American controls, 443 East Asian ancestry cases, 6,209 East Asian ancestry controls, 59,205 European ancestry cases, 375,439 European ancestry controls T 0.5353 5E-13 12.302 rs340874 0.04805 diabetic neuropathy (EFO:1000783)
PMID:39024449
GWAS1699052_H GCST005186 Fasting blood glucose Up to 58,074 European ancestry individuals T 0.4832 9E-7 6.046 rs340874 0.0159 obsolete_fasting blood glucose measurement (EFO:0004465)
PMID:22581228
GWAS1699415_H GCST001527 Fasting blood glucose (BMI interaction) Up to 58,074 European ancestry individuals T 0.4754 4E-9 8.398 rs340874 0.0011 obsolete_fasting blood glucose measurement (EFO:0004465)
body mass index (EFO:0004340)
PMID:22581228
GWAS1700557_H GCST000568 Fasting blood glucose 46,186 European ancestry individuals C 0.52 7E-12 11.155 rs340874 0.013 obsolete_fasting blood glucose measurement (EFO:0004465)
PMID:20081858
GWAS1634533_H GCST90018981 Medication use (drugs used in diabetes) 15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls C NR 2E-10 9.699 rs340874 0.0488 Drugs used in diabetes use measurement (EFO:0009924)
PMID:34594039
GWAS1634606_H GCST006867 Type 2 diabetes 61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls T 0.43609575454678 8E-18 17.097 rs340874 0.0626 PMID:30054458
GWAS1634647_H GCST011990 Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect) 11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls C NR 3E-8 7.523 rs340874 1.06 psoriasis (EFO:0000676)
PMID:33385400
GWAS1634809_H GCST005180 Homeostasis model assessment of beta-cell function 36,466 European ancestry individuals C 0.52 0.000005 5.302 rs340874 0.008 HOMA-B (EFO:0004469)
PMID:20081858
GWAS1634845_H GCST010555 Type 2 diabetes 148,726 European ancestry cases, 965,732 European ancestry controls C 0.5528 5E-48 47.302 rs340874 0.0668 PMID:32541925
GWAS1634923_H GCST010557 Type 2 diabetes 148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls C 0.4991 6E-45 44.222 rs340874 0.0543 PMID:32541925
GWAS1634941_H GCST007077 Type 2 diabetes approximately 459,000 European ancestry individuals ? NR 3E-12 11.523 rs340874 N/A PMID:30595370
GWAS1635012_H GCST005414 Type 2 diabetes 19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls C NR 1E-7 7 rs340874 1.0869565 PMID:29358691
GWAS1635040_H GCST004894 Type 2 diabetes 6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls C 0.5308 6E-10 9.222 rs340874 0.049 PMID:28869590
GWAS1635041_H GCST004894 Type 2 diabetes 6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls C 0.5308 1E-8 8 rs340874 0.0597 PMID:28869590
GWAS1635135_H GCST009379 Type 2 diabetes 74,124 European ancestry cases, 824,006 European ancestry controls C 0.5555 2E-22 21.699 rs340874 1.07 PMID:30297969
GWAS1635140_H GCST90444202 Type 2 diabetes 51,256 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry cases, 370,487 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry controls C 0.545758 4E-27 26.398 rs340874 0.0844 PMID:39379762
GWAS1637384_H GCST90475689 Diabetic retinopathy (PheCode 250.7) 29,668 European ancestry cases, 402,541 European ancestry controls T 0.4502 5E-12 11.302 rs340874 0.05623 diabetic retinopathy (EFO:0003770)
PMID:39024449
GWAS1641728_H GCST90479589 Diabetes / "Sugar" 16,718 African American or Afro-Caribbean cases, 38,787 African American or Afro-Caribbean controls, 8,910 Hispanic or Latin American cases, 20,404 Hispanic or Latin American controls, 1,007 East Asian ancestry cases, 2,540 East Asian ancestry controls, 80,160 European ancestry cases, 235,508 European ancestry controls T 0.5117 2E-15 14.699 rs340874 0.05089 diabetes mellitus (EFO:0000400)
PMID:39024449
GWAS1642800_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls C 0.45174 1E-70 70 rs340874 N/A PMID:38374256
GWAS1645462_H GCST90479626 Glucose (fasting status unknown, mean, inv-norm transformed) 118,233 African American or Afro-Caribbean individuals, 57,284 Hispanic or Latin American individuals, 6,317 East Asian ancestry individuals, 419,946 European ancestry individuals T 0.5382 1E-32 32 rs340874 0.03426 glucose measurement (EFO:0004468)
PMID:39024449
1 to 20 of 29 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90479883 GWAS Catalog

Note Type Note Reference