GWAS1641357_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1641357_H (mean corpuscular hemoglobin concentration QTL GWAS1641357 (human)) Homo sapiens

Symbol: GWAS1641357_H
Name: mean corpuscular hemoglobin concentration QTL GWAS1641357 (human)
RGD ID: 597584497
Trait: mean corpuscular hemoglobin concentration
Measurement Type: mean corpuscular hemoglobin concentration   (CMO:0000291)    
LOD Score: Not Available
P Value: 3.0E-18
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38826,368,537 - 26,368,538RGD_MAPPER_PIPELINEGRCh38
GRCh37826,226,053 - 26,226,054RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1641357_HHumanmean corpuscular hemoglobin concentration  IAGPrs6557916405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1641357_HHumanmean corpuscular hemoglobin concentration  IAGPrs6557916405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
733714PPP2R2Aprotein phosphatase 2 regulatory subunit Balpha82629150826372680Human


Peak: (rs6557916)
Human AssemblyChrPosition (strand)Source
GRCh38826,368,537 - 26,368,538RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
597584497GWAS1641357_Hmean corpuscular hemoglobin concentration QTL GWAS1641357 (human)3e-18mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)82636853726368538Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1641357_H GCST90479672 mean corpuscular hemoglobin (MCH, maximum, inv-norm transformed) 114,852 African American or Afro-Caribbean individuals, 55,783 Hispanic or Latin American individuals, 5,942 East Asian ancestry individuals, 407,288 European ancestry individuals T 0.3856 3E-18 17.523 rs6557916 0.02869 mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90479672 GWAS Catalog

Note Type Note Reference