GWAS1536125_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1536125_H (acute myeloid leukemia QTL GWAS1536125 (human)) Homo sapiens

Symbol: GWAS1536125_H
Name: acute myeloid leukemia QTL GWAS1536125 (human)
RGD ID: 597440051
Trait: leukocyte integrity trait   (VT:0010898)    
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh389121,317,523 - 121,317,524RGD_MAPPER_PIPELINEGRCh38
GRCh379124,079,801 - 124,079,802RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1536125_HHumanacute myeloid leukemia  IAGPrs2900193405850206 GWAS_CATALOGPMID:27903959

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1536125_HHumanAcute myeloid leukemia  IAGPrs2900193405850206 GWAS_CATALOGPMID:27903959

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1536125_HHumanleukocyte integrity trait  IAGPrs2900193405850206 GWAS_CATALOGPMID:27903959

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1536125_HHumanacute myeloid leukemia  IAGPrs2900193405850206 GWAS_CATALOGPMID:27903959

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346375GSNgelsolin9121201483121332842Human


Peak: (rs2900193)
Human AssemblyChrPosition (strand)Source
GRCh389121,317,523 - 121,317,524RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597440052GWAS1536126_Hacute myeloid leukemia QTL GWAS1536126 (human)0.0000008leukocyte integrity trait (VT:0010898)9121317523121317524Human
597440051GWAS1536125_Hacute myeloid leukemia QTL GWAS1536125 (human)2e-09leukocyte integrity trait (VT:0010898)9121317523121317524Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1536125_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls T 0.001 2E-9 8.699 rs2900193 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
GWAS1536126_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls T 0.117 8E-7 6.097 rs2900193 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
Database
Acc Id
Source(s)
GWAS Catalog GCST008413 GWAS Catalog

Note Type Note Reference