GWAS1535284_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1535284_H (peripheral arterial disease, traffic air pollution measurement QTL GWAS1535284 (human)) Homo sapiens

Symbol: GWAS1535284_H
Name: peripheral arterial disease, traffic air pollution measurement QTL GWAS1535284 (human)
RGD ID: 597439210
Trait: peripheral arterial disease, traffic air pollution measurement
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385162,570,484 - 162,570,485RGD_MAPPER_PIPELINEGRCh38
GRCh375161,997,490 - 161,997,491RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1535284_HHumanperipheral artery disease  IAGPrs10063408405850206 GWAS_CATALOGPMID:27082954

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1535284_HHumanPeripheral arterial stenosis  IAGPrs10063408405850206 GWAS_CATALOGPMID:27082954
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1535284_HHumanperipheral arterial disease  IAGPrs10063408405850206 GWAS_CATALOGPMID:27082954
GWAS1535284_HHumantraffic air pollution measurement  IAGPrs10063408405850206 GWAS_CATALOGPMID:27082954

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38653873LOC105377697uncharacterized LOC1053776975162534943162591685Human


Peak: (rs10063408)
Human AssemblyChrPosition (strand)Source
GRCh385162,570,484 - 162,570,485RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289409BW320_HBody weight QTL 320 (human)3.50.0002Body weightlean mass5160925164181538259Human
597439210GWAS1535284_Hperipheral arterial disease, traffic air pollution measurement QTL GWAS1535284 (human)0.000004peripheral arterial disease, traffic air pollution measurement5162570484162570485Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1535284_H GCST004482 Peripheral arterial disease (traffic-related air pollution interaction) 104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls G 0.28 0.000004 5.398 rs10063408 2.83 peripheral arterial disease (EFO:0004265)
traffic air pollution measurement (EFO:0007908)
 PMID:27082954
Database
Acc Id
Source(s)
GWAS Catalog GCST004482 GWAS Catalog

Note Type Note Reference