GWAS1533790_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1533790_H (nucleotide measurement QTL GWAS1533790 (human)) Homo sapiens

Symbol: GWAS1533790_H
Name: nucleotide measurement QTL GWAS1533790 (human)
RGD ID: 597437716
Trait: nucleotide metabolism trait   (VT:0003806)    
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38486,198,071 - 86,198,072RGD_MAPPER_PIPELINEGRCh38
GRCh37487,119,224 - 87,119,225RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1533790_HHumannucleotide metabolism trait  IAGPrs72662084405850206 GWAS_CATALOGPMID:31882771

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1533790_HHumannucleotide measurement  IAGPrs72662084405850206 GWAS_CATALOGPMID:31882771

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
733441MAPK10mitogen-activated protein kinase 1048601040586594074Human
14700822MAPK10-AS1MAPK10 antisense RNA 148611980686219926Human


Peak: (rs72662084)
Human AssemblyChrPosition (strand)Source
GRCh38486,198,071 - 86,198,072RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597437716GWAS1533790_Hnucleotide measurement QTL GWAS1533790 (human)0.000005nucleotide metabolism trait (VT:0003806)48619807186198072Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1533790_H GCST90134132 N6-carbamoylthreonyladenosine levels in elite athletes 490 individuals ? NR 0.000005 5.302 rs72662084 0.933045 nucleotide measurement (EFO:0010513)
 PMID:31882771
Database
Acc Id
Source(s)
GWAS Catalog GCST90134132 GWAS Catalog

Note Type Note Reference