GWAS1506730_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1506730_H (Alzheimer disease QTL GWAS1506730 (human)) Homo sapiens

Symbol: GWAS1506730_H
Name: Alzheimer disease QTL GWAS1506730 (human)
RGD ID: 597410656
Trait: Alzheimer disease
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381951,219,326 - 51,219,327RGD_MAPPER_PIPELINEGRCh38
GRCh371951,722,582 - 51,722,583RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1506730_HHumanAlzheimer's disease  IAGPrs12609179405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:38184787

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1506730_HHumanAlzheimer disease  IAGPrs12609179405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:38184787

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38667249LOC107985327uncharacterized LOC107985327195118690851271167Human
1347694CD33CD33 molecule195121107651240016Human


Peak: (rs12609179)
Human AssemblyChrPosition (strand)Source
GRCh381951,219,326 - 51,219,327RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
597411000GWAS1507074_HAlzheimer disease QTL GWAS1507074 (human)0.000007Alzheimer disease195121932651219327Human
597410656GWAS1506730_HAlzheimer disease QTL GWAS1506730 (human)0.000006Alzheimer disease195121932651219327Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1506730_H GCST90472760 Rapidly progressive Alzheimer's disease (clinical vs typical) (case-control set 1) 142 European, African American, Asian or unknown ancestry cases, 426 European, African American, Asian or unknown ancestry controls ? NR 0.000006 5.222 rs12609179 0.5208 PMID:38184787
GWAS1507074_H GCST90472765 Rapidly progressive Alzheimer's disease (clinical vs typical) (case-control set 2) 142 European, African American, Asian or unknown ancestry cases, 426 European, African American, Asian or unknown ancestry controls ? NR 0.000007 5.155 rs12609179 0.5223 PMID:38184787
Database
Acc Id
Source(s)
GWAS Catalog GCST90472760 GWAS Catalog

Note Type Note Reference