GWAS1436748_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1436748_H (Alzheimer disease QTL GWAS1436748 (human)) Homo sapiens

Symbol: GWAS1436748_H
Name: Alzheimer disease QTL GWAS1436748 (human)
RGD ID: 597340674
Trait: Alzheimer disease
LOD Score: Not Available
P Value: 7.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381679,574,511 - 79,574,512RGD_MAPPER_PIPELINEGRCh38
GRCh371679,608,408 - 79,608,409RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1436748_HHumanAlzheimer's disease  IAGPrs450674405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:37985413

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1436748_HHumanAlzheimer disease  IAGPrs450674405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:37985413

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731331MAFMAF bZIP transcription factor167920262279600737Human


Peak: (rs450674)
Human AssemblyChrPosition (strand)Source
GRCh381679,574,511 - 79,574,512RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597268075GWAS1364149_HAlzheimer disease QTL GWAS1364149 (human)0.0000002Alzheimer disease167957451179574512Human
596966151GWAS1085670_HAlzheimer disease QTL GWAS1085670 (human)0.0000002Alzheimer disease167957451179574512Human
597340674GWAS1436748_HAlzheimer disease QTL GWAS1436748 (human)7e-08Alzheimer disease167957451179574512Human
597302852GWAS1398926_HAlzheimer disease QTL GWAS1398926 (human)3e-08Alzheimer disease167957451179574512Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1436748_H GCST90399479 Alzheimer's disease 539 Latin American ancestry cases, 854 Latin American ancestry controls, 487,511 European ancestry individuals C NR 7E-8 7.155 rs450674 0.96 PMID:37985413
GWAS1364149_H GCST90301303 Alzheimer's disease 93,263 European ancestry cases, 532,679 European ancestry controls, 2,748 African ancestry cases, 5,222 African ancestry controls, 3,962 East Asian ancestry cases, 4,074 East Asian ancestry controls, 1,088 Hispanic or Latin American cases, 1,152 Hispanic or Latin American controls T 0.73755852 2E-7 6.699 rs450674 N/A PMID:37198259
GWAS1398926_H GCST90027158 Alzheimer's disease 39,106 European ancestry clinically diagnosed cases, 46,828 European ancestry proxy cases, 401,577 European ancestry controls C 0.3728 3E-8 7.523 rs450674 0.96 PMID:35379992
Database
Acc Id
Source(s)
GWAS Catalog GCST90399479 GWAS Catalog

Note Type Note Reference