GWAS1431439_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1431439_H (smoking initiation QTL GWAS1431439 (human)) Homo sapiens

Symbol: GWAS1431439_H
Name: smoking initiation QTL GWAS1431439 (human)
RGD ID: 597335365
Trait: smoking initiation
LOD Score: Not Available
P Value: 2.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385161,361,820 - 161,361,821RGD_MAPPER_PIPELINEGRCh38
GRCh375160,788,827 - 160,788,828RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1431439_HHumansmoking initiation  IAGPrs2910300405850206 GWAS_CATALOGPMID:36477530

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
735355GABRB2gamma-aminobutyric acid type A receptor subunit beta25161288436161548404Human


Peak: (rs2910300)
Human AssemblyChrPosition (strand)Source
GRCh385161,361,820 - 161,361,821RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289409BW320_HBody weight QTL 320 (human)3.50.0002Body weightlean mass5160925164181538259Human
597335365GWAS1431439_Hsmoking initiation QTL GWAS1431439 (human)2e-12smoking initiation5161361820161361821Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1431439_H GCST90243968 Smoking initiation 2,669,029 European ancestry individuals T 0.666 2E-12 11.699 rs2910300 0.00648 smoking initiation (EFO:0005670)
 PMID:36477530
Database
Acc Id
Source(s)
GWAS Catalog GCST90243968 GWAS Catalog

Note Type Note Reference