GWAS1421972_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1421972_H (color vision disorder QTL GWAS1421972 (human)) Homo sapiens

Symbol: GWAS1421972_H
Name: color vision disorder QTL GWAS1421972 (human)
RGD ID: 597325898
Trait: color vision disorder
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38440,204,752 - 40,204,753RGD_MAPPER_PIPELINEGRCh38
GRCh37440,206,372 - 40,206,373RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1316925RHOHras homolog family member H44019108040246967Human


Peak: (rs12512369)
Human AssemblyChrPosition (strand)Source
GRCh38440,204,752 - 40,204,753RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597325898GWAS1421972_Hcolor vision disorder QTL GWAS1421972 (human)0.000005color vision disorder44020475240204753Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1421972_H GCST90301670 Color vision defects (Deutan-Protan) 31 Silk Road (founder/genetic isolate) cases, 483 Silk Road (founder/genetic isolate) controls A 0.98 0.000005 5.302 rs12512369 0.2833135 PMID:37359372
Database
Acc Id
Source(s)
GWAS Catalog GCST90301670 GWAS Catalog

Note Type Note Reference