GWAS1420974_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1420974_H (systolic blood pressure QTL GWAS1420974 (human)) Homo sapiens

Symbol: GWAS1420974_H
Name: systolic blood pressure QTL GWAS1420974 (human)
RGD ID: 597324900
Trait: systolic blood pressure
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 2.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381918,344,634 - 18,344,635RGD_MAPPER_PIPELINEGRCh38
GRCh371918,455,444 - 18,455,445RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1420974_HHumansystolic blood pressure  IAGPrs34518929405850206 GWAS_CATALOGPMID:39134668

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1420974_HHumansystolic blood pressure  IAGPrs34518929405850206 GWAS_CATALOGPMID:39134668

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348411PGPEP1pyroglutamyl-peptidase I191834059818369950Human
155767264LOC127890850NANOG-H3K27ac hESC enhancer GRCh37_chr19:18454745-18455584191834393518344774Human


Peak: (rs34518929)
Human AssemblyChrPosition (strand)Source
GRCh381918,344,634 - 18,344,635RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300034BP50_HBlood pressure QTL 50 (human)2.10.00094Blood pressuresystolic191108946337089463Human
596968486GWAS1088005_Hsystolic blood pressure QTL GWAS1088005 (human)2e-16systolic blood pressure191834463418344635Human
597423480GWAS1519554_Hsystolic blood pressure QTL GWAS1519554 (human)1e-09systolic blood pressuresystolic blood pressure (CMO:0000004)191834463418344635Human
597324900GWAS1420974_Hsystolic blood pressure QTL GWAS1420974 (human)2e-16systolic blood pressuresystolic blood pressure (CMO:0000004)191834463418344635Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1420974_H GCST90435415 Systolic blood pressure 404,507 European ancestry individuals ? NR 2E-16 15.699 rs34518929 0.0179243 systolic blood pressure (EFO:0006335)
 PMID:39134668
GWAS1519554_H GCST90449056 Systolic blood pressure (MTAG) at least 757,601 European ancestry individuals (MTAG boosted by 455,258 Alzheimer's disease samples) A NR 1E-9 9 rs34518929 0.011793822 systolic blood pressure (EFO:0006335)
 PMID:39537608
Database
Acc Id
Source(s)
GWAS Catalog GCST90435415 GWAS Catalog

Note Type Note Reference