GWAS1412854_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1412854_H (vaginal microbiome measurement QTL GWAS1412854 (human)) Homo sapiens

Symbol: GWAS1412854_H
Name: vaginal microbiome measurement QTL GWAS1412854 (human)
RGD ID: 597316780
Trait: vaginal microbiome measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381679,361,746 - 79,361,747RGD_MAPPER_PIPELINEGRCh38
GRCh371679,395,643 - 79,395,644RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1412854_HHumanvaginal microbiome measurement  IAGPrs75451516405850206 GWAS_CATALOGPMID:34282934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731331MAFMAF bZIP transcription factor167920262279600737Human


Peak: (rs75451516)
Human AssemblyChrPosition (strand)Source
GRCh381679,361,746 - 79,361,747RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597316780GWAS1412854_Hvaginal microbiome measurement QTL GWAS1412854 (human)0.000008vaginal microbiome measurement167936174679361747Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1412854_H GCST90026989 Vaginal microbiome relative abundance (o_Campylobacterales) 315 Chinese ancestry individuals A NR 0.000008 5.097 rs75451516 0.9305 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
Database
Acc Id
Source(s)
GWAS Catalog GCST90026989 GWAS Catalog

Note Type Note Reference