GWAS1411958_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1411958_H (vaginal microbiome measurement QTL GWAS1411958 (human)) Homo sapiens

Symbol: GWAS1411958_H
Name: vaginal microbiome measurement QTL GWAS1411958 (human)
RGD ID: 597315884
Trait: vaginal microbiome measurement
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384109,225,176 - 109,225,177RGD_MAPPER_PIPELINEGRCh38
GRCh374110,146,332 - 110,146,333RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1411958_HHumanvaginal microbiome measurement  IAGPrs117189532405850206 GWAS_CATALOGPMID:34282934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603375COL25A1collagen type XXV alpha 1 chain4108808725109302658Human


Peak: (rs117189532)
Human AssemblyChrPosition (strand)Source
GRCh384109,225,176 - 109,225,177RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human
597314431GWAS1410505_Hvaginal microbiome measurement QTL GWAS1410505 (human)0.000007vaginal microbiome measurement4109225176109225177Human
597315884GWAS1411958_Hvaginal microbiome measurement QTL GWAS1411958 (human)0.0000002vaginal microbiome measurement4109225176109225177Human
597311356GWAS1407430_Hvaginal microbiome measurement QTL GWAS1407430 (human)0.000003vaginal microbiome measurement4109225176109225177Human
597309728GWAS1405802_Hvaginal microbiome measurement QTL GWAS1405802 (human)0.000005vaginal microbiome measurement4109225176109225177Human
597316369GWAS1412443_Hvaginal microbiome measurement QTL GWAS1412443 (human)0.000009vaginal microbiome measurement4109225176109225177Human
597312470GWAS1408544_Hvaginal microbiome measurement QTL GWAS1408544 (human)5e-09vaginal microbiome measurement4109225176109225177Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1411958_H GCST90027018 Vaginal microbiome relative abundance (s_Peptoniphilus vaginalis) 315 Chinese ancestry individuals T NR 2E-7 6.699 rs117189532 1.254 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1405802_H GCST90026870 Vaginal microbiome MetaCyc pathway (PWY-6397|mycolyl-arabinogalactan-peptidoglycan complex biosynthesis) 315 Chinese ancestry individuals T NR 0.000005 5.302 rs117189532 1.105 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1407430_H GCST90026924 Vaginal microbiome MetaCyc pathway (PWY-7332|superpathway of UDP-N-acetylglucosamine-derived O-antigen building blocks biosynthesis) 315 Chinese ancestry individuals T NR 0.000003 5.523 rs117189532 1.296 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1408544_H GCST90027008 Vaginal microbiome relative abundance (s_Dialister propionicifaciens) 315 Chinese ancestry individuals T NR 5E-9 8.302 rs117189532 1.333 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1410505_H GCST90027009 Vaginal microbiome relative abundance (s_Finegoldia magna) 315 Chinese ancestry individuals T NR 0.000007 5.155 rs117189532 1.236 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
GWAS1412443_H GCST90026995 Vaginal microbiome relative abundance (f_Peptostreptococcales-Tissierellales) 315 Chinese ancestry individuals T NR 0.000009 5.046 rs117189532 1.324 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
None Available GCST90026989 Vaginal microbiome relative abundance (o_Campylobacterales) 315 Chinese ancestry individuals T NR 0.000009 5.046 rs117189532 1.117 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
None Available GCST90027002 Vaginal microbiome relative abundance (g_Peptoniphilus) 315 Chinese ancestry individuals T NR 2E-7 6.699 rs117189532 1.312 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
Database
Acc Id
Source(s)
GWAS Catalog GCST90027002 GWAS Catalog
  GCST90027018 GWAS Catalog

Note Type Note Reference