GWAS1401123_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1401123_H (coronary artery disease QTL GWAS1401123 (human)) Homo sapiens

Symbol: GWAS1401123_H
Name: coronary artery disease QTL GWAS1401123 (human)
RGD ID: 597305049
Trait: coronary artery disease
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38536,157,160 - 36,157,162RGD_MAPPER_PIPELINEGRCh38
GRCh37536,157,262 - 36,157,264RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1401123_HHumancoronary artery disease  IAGPrs5867305405850206 GWAS_CATALOGPMID:36474045

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1401123_HHumanCoronary artery atherosclerosis  IAGPrs5867305405850206 GWAS_CATALOGPMID:36474045
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1401123_HHumancoronary artery disease  IAGPrs5867305405850206 GWAS_CATALOGPMID:36474045

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1607086SKP2S-phase kinase associated protein 253615211136193530Human


Peak: (rs5867305)
Human AssemblyChrPosition (strand)Source
GRCh38536,157,160 - 36,157,162RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597305049GWAS1401123_Hcoronary artery disease QTL GWAS1401123 (human)4e-08coronary artery disease53615716036157162Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1401123_H GCST90132315 Coronary artery disease 210,842 European ancestry, East Asian ancestry, unknown cases, 1,167,328 European ancestry, East Asian ancestry, unknown controls CA 0.86 4E-8 7.398 rs5867305 0.967 coronary artery disease (EFO:0001645)
 PMID:36474045
Database
Acc Id
Source(s)
GWAS Catalog GCST90132315 GWAS Catalog

Note Type Note Reference