GWAS1398635_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1398635_H (platelet count QTL GWAS1398635 (human)) Homo sapiens

Symbol: GWAS1398635_H
Name: platelet count QTL GWAS1398635 (human)
RGD ID: 597302561
Trait: platelet quantity   (VT:0003179)    
Measurement Type: platelet count   (CMO:0000029)    
LOD Score: Not Available
P Value: 4.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382169,971,250 - 169,971,251RGD_MAPPER_PIPELINEGRCh38
GRCh372170,827,760 - 170,827,761RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1398635_HHumanplatelet count  IAGPrs9752315405850206 GWAS_CATALOGPMID:34594039

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1398635_HHumanplatelet quantity  IAGPrs9752315405850206 GWAS_CATALOGPMID:34594039

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1398635_HHumanplatelet count  IAGPrs9752315405850206 GWAS_CATALOGPMID:34594039

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346219UBR3ubiquitin protein ligase E3 component n-recognin 32169827454170084131Human


Peak: (rs9752315)
Human AssemblyChrPosition (strand)Source
GRCh382169,971,250 - 169,971,251RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597302561GWAS1398635_Hplatelet count QTL GWAS1398635 (human)4e-09platelet quantity (VT:0003179)platelet count (CMO:0000029)2169971250169971251Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1398635_H GCST90018969 Platelet count 350,474 European ancestry individuals, 148,623 East Asian ancestry individuals A NR 4E-9 8.398 rs9752315 0.0265 platelet count (EFO:0004309)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90018969 GWAS Catalog

Note Type Note Reference