GWAS1375414_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1375414_H (hydroxy-N6,N6,N6-trimethyllysine measurement QTL GWAS1375414 (human)) Homo sapiens

Symbol: GWAS1375414_H
Name: hydroxy-N6,N6,N6-trimethyllysine measurement QTL GWAS1375414 (human)
RGD ID: 597279340
Trait: hydroxy-N6,N6,N6-trimethyllysine measurement
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381668,387,873 - 68,387,874RGD_MAPPER_PIPELINEGRCh38
GRCh371668,421,776 - 68,421,777RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1375414_HHumanhydroxy-N6,N6,N6-trimethyllysine measurement  IAGPrs8055813405850206 GWAS_CATALOGPMID:35347128

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1347416SMPD3sphingomyelin phosphodiesterase 3166835832768448508Human


Peak: (rs8055813)
Human AssemblyChrPosition (strand)Source
GRCh381668,387,873 - 68,387,874RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597287545GWAS1383619_Hbody mass index QTL GWAS1383619 (human)2e-08body mass indexbody mass index (BMI) (CMO:0000105)166838787368387874Human
597279340GWAS1375414_Hhydroxy-N6,N6,N6-trimethyllysine measurement QTL GWAS1375414 (human)2e-13hydroxy-N6,N6,N6-trimethyllysine measurement166838787368387874Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1375414_H GCST90139531 Hydroxy-N6,N6,N6-trimethyllysine levels 6,136 Finnish ancestry individuals G NR 2E-13 12.699 rs8055813 0.15 hydroxy-N6,N6,N6-trimethyllysine measurement (EFO:0800112)
 PMID:35347128
GWAS1383619_H GCST90018947 Body mass index 359,983 European ancestry individuals, 163,835 East Asian ancestry individuals G NR 2E-8 7.699 rs8055813 0.0129 body mass index (EFO:0004340)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90139531 GWAS Catalog

Note Type Note Reference