GWAS1360987_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1360987_H (cortical thickness QTL GWAS1360987 (human)) Homo sapiens

Symbol: GWAS1360987_H
Name: cortical thickness QTL GWAS1360987 (human)
RGD ID: 597264913
Trait: cortical thickness
LOD Score: Not Available
P Value: 4.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38826,369,968 - 26,369,969RGD_MAPPER_PIPELINEGRCh38
GRCh37826,227,484 - 26,227,485RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1360987_HHumancortical thickness  IAGPrs3200031405850206 GWAS_CATALOGPMID:38890310

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
733714PPP2R2Aprotein phosphatase 2 regulatory subunit Balpha82629150826372680Human


Peak: (rs3200031)
Human AssemblyChrPosition (strand)Source
GRCh38826,369,968 - 26,369,969RGD_MAPPER_PIPELINE


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
596966934GWAS1086453_Hcortical thickness QTL GWAS1086453 (human)1e-08cortical thickness82636996826369969Human
596967537GWAS1087056_Hcortical thickness QTL GWAS1087056 (human)1e-09cortical thickness82636996826369969Human
597264913GWAS1360987_Hcortical thickness QTL GWAS1360987 (human)4e-09cortical thickness82636996826369969Human
597264272GWAS1360346_Hcortical thickness QTL GWAS1360346 (human)1e-08cortical thickness82636996826369969Human
597194353GWAS1290427_Hcortical thickness QTL GWAS1290427 (human)5e-14cortical thickness82636996826369969Human
597192562GWAS1288636_Hcortical thickness QTL GWAS1288636 (human)4e-17cortical thickness82636996826369969Human
597266517GWAS1362591_Hcortical thickness QTL GWAS1362591 (human)1e-09cortical thickness82636996826369969Human
597193718GWAS1289792_Hcortical thickness QTL GWAS1289792 (human)3e-13cortical thickness82636996826369969Human
596967399GWAS1086918_Hcortical thickness QTL GWAS1086918 (human)4e-09cortical thickness82636996826369969Human

1 to 10 of 14 rows


1 to 11 of 11 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1360987_H GCST90399878 Regional cortical thickness (caudalmiddlefrontal) 34,544 European ancestry individuals T NR 4E-9 8.398 rs3200031 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1288270_H GCST90271807 Motor premotor thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 8E-14 13.097 rs3200031 0.1 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1288271_H GCST90271808 Occipital thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 2E-12 11.699 rs3200031 0.0945 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1288636_H GCST90271809 Perisylvian thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 4E-17 16.398 rs3200031 0.1126 cortical thickness (EFO:0004840)
 PMID:36893272
None Available GCST90271810 Superior parietal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 2E-12 11.699 rs3200031 0.0939 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1289792_H GCST90271813 Ventromedial occipital thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 3E-13 12.523 rs3200031 0.0975 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1290008_H GCST90271802 Dorsolateral prefrontal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 3E-12 11.523 rs3200031 0.0933 cortical thickness (EFO:0004840)
 PMID:36893272
None Available GCST90271803 Inferior parietal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 8E-14 13.097 rs3200031 0.1001 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1290427_H GCST90271804 Medial prefrontal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 5E-14 13.302 rs3200031 0.1007 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1360346_H GCST90399910 Regional cortical thickness (transversetemporal) 34,576 European ancestry individuals T NR 1E-8 8 rs3200031 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1362591_H GCST90399894 Regional cortical thickness (parsorbitalis) 34,548 European ancestry individuals T NR 1E-9 9 rs3200031 N/A cortical thickness (EFO:0004840)
 PMID:38890310
1 to 11 of 11 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90399878 GWAS Catalog

Note Type Note Reference