GWAS1359870_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1359870_H (COVID-19 QTL GWAS1359870 (human)) Homo sapiens

Symbol: GWAS1359870_H
Name: COVID-19 QTL GWAS1359870 (human)
RGD ID: 597263796
Trait: COVID-19
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812132,564,254 - 132,564,255RGD_MAPPER_PIPELINEGRCh38
GRCh3712133,140,840 - 133,140,841RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1359870_HHumanCOVID-19  IAGPrs12809318405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:35922517


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2303695FBRSL1fibrosin like 112132490151132585188Human


Peak: (rs12809318)
Human AssemblyChrPosition (strand)Source
GRCh3812132,564,254 - 132,564,255RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597263645GWAS1359719_HCOVID-19 QTL GWAS1359719 (human)3e-09response to Coronaviridae infection (VT:0010997)12132564254132564255Human
597263796GWAS1359870_HCOVID-19 QTL GWAS1359870 (human)0.000001COVID-1912132564254132564255Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1359870_H GCST90134596 COVID-19 (critical illness vs population) 188 African ancestry cases, 11,232 African ancestry controls, 641 Hispanic or Latin American cases, 95,479 Hispanic or Latin American controls, 441 East Asian ancestry cases, 2,776 East Asian ancestry controls, 7,641 European ancestry cases, 1,632,197 European ancestry controls, 314 Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 948 Greater Middle Eastern (Middle Eastern, North African or Persian) controls, 151 South Asian ancestry cases, 34,013 South Asian ancestry controls C 0.511 0.000001 6 rs12809318 0.92 PMID:35922517
GWAS1359719_H GCST90134597 COVID-19 (hospitalized vs population) 2,113 African ancestry cases, 121,925 African ancestry controls, 1,709 Hispanic or Latin American cases, 150,547 Hispanic or Latin American controls, 1,551 East Asian ancestry cases, 15,825 East Asian ancestry controls, 18,605 European ancestry cases, 2,490,909 European ancestry controls, 584 Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 14,491 Greater Middle Eastern (Middle Eastern, North African or Persian) controls, 465 South Asian ancestry cases, 42,575 South Asian ancestry controls C 0.518 3E-9 8.523 rs12809318 0.94 PMID:35922517
None Available GCST90274862 COVID-19 severity 2,453 European ancestry hospitalised cases, 956 European ancestry non-hospitalised controls, up to 25,031 hospitalised cases, up to 2,062,030 non-hospitalised or general population controls, 244 African ancestry hospitalised cases, 201 African ancestry non-hospitalised controls, 1 Native Brazilian ancestry hospitalised case, 4 Native Brazilian ancestry non-hospitalised controls, 39 Asian ancestry hospitalised cases, 30 Asian ancestry non-hospitalised controls ? NR 3E-9 8.523 rs12809318 0.064 COVID-19 symptoms measurement (EFO:0600019)
PMID:35368071
Database
Acc Id
Source(s)
GWAS Catalog GCST90134596 GWAS Catalog

Note Type Note Reference