GWAS1355891_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1355891_H (schizophrenia QTL GWAS1355891 (human)) Homo sapiens

Symbol: GWAS1355891_H
Name: schizophrenia QTL GWAS1355891 (human)
RGD ID: 597259817
Trait: schizophrenia
LOD Score: Not Available
P Value: 6.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381433,344,138 - 33,344,139RGD_MAPPER_PIPELINEGRCh38
GRCh371433,813,344 - 33,813,345RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1355891_HHumanschizophrenia  IAGPrs17100717405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:35396580


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1316218NPAS3neuronal PAS domain protein 3143293478533804173Human


Peak: (rs17100717)
Human AssemblyChrPosition (strand)Source
GRCh381433,344,138 - 33,344,139RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597259817GWAS1355891_Hschizophrenia QTL GWAS1355891 (human)0.0000006schizophrenia143334413833344139Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1355891_H GCST90128471 Schizophrenia 53,386 European ancestry cases, 77,258 European ancestry controls, 14,004 East Asian ancestry cases, 16,757 East Asian ancestry controls, 6,152 African American cases, 3,918 African American controls, 1,234 Latino cases, 3,090 Latino controls C 0.828 6E-7 6.222 rs17100717 0.95371 PMID:35396580
Database
Acc Id
Source(s)
GWAS Catalog GCST90128471 GWAS Catalog

Note Type Note Reference