GWAS1350622_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1350622_H (hemoglobin measurement, mastiha supplement exposure measurement QTL GWAS1350622 (human)) Homo sapiens

Symbol: GWAS1350622_H
Name: hemoglobin measurement, mastiha supplement exposure measurement QTL GWAS1350622 (human)
RGD ID: 597254548
Trait: hemoglobin measurement, mastiha supplement exposure measurement
Measurement Type: hemoglobin measurement   (CMO:0000508)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386166,258,275 - 166,258,276RGD_MAPPER_PIPELINEGRCh38
GRCh376166,671,763 - 166,671,764RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1350622_HHumanhemoglobin measurement  IAGPrs12211694405850206 GWAS_CATALOGPMID:34025683

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1350622_HHumanhemoglobin measurement  IAGPrs12211694405850206 GWAS_CATALOGPMID:34025683
GWAS1350622_HHumanmastiha supplement exposure measurement  IAGPrs12211694405850206 GWAS_CATALOGPMID:34025683

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38637653LOC107986668uncharacterized LOC1079866686166254686166259031Human
155230585LOC126859889CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:166671501-1666727006166258013166259292Human


Peak: (rs12211694)
Human AssemblyChrPosition (strand)Source
GRCh386166,258,275 - 166,258,276RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
597254548GWAS1350622_Hhemoglobin measurement, mastiha supplement exposure measurement QTL GWAS1350622 (human)1e-08hemoglobin measurement, mastiha supplement exposure measurementhemoglobin measurement (CMO:0000508)6166258275166258276Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1350622_H GCST012440 Hemoglobin levels in non-alcoholic fatty liver disease x mastiha supplementation interaction 35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals A 0.69 1E-8 8 rs12211694 1.662 hemoglobin measurement (EFO:0004509)
mastiha supplement exposure measurement (EFO:0600067)
 PMID:34025683
Database
Acc Id
Source(s)
GWAS Catalog GCST012440 GWAS Catalog

Note Type Note Reference