GWAS1348741_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1348741_H (platelet count QTL GWAS1348741 (human)) Homo sapiens

Symbol: GWAS1348741_H
Name: platelet count QTL GWAS1348741 (human)
RGD ID: 597252667
Trait: platelet quantity   (VT:0003179)    
Measurement Type: platelet count   (CMO:0000029)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382031,546,015 - 31,546,016RGD_MAPPER_PIPELINEGRCh38
GRCh372030,133,818 - 30,133,819RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1348741_HHumanplatelet count  IAGPrs4911156405850206 GWAS_CATALOGPMID:34469753

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1348741_HHumanplatelet quantity  IAGPrs4911156405850206 GWAS_CATALOGPMID:34469753

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1348741_HHumanplatelet count  IAGPrs4911156405850206 GWAS_CATALOGPMID:34469753

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1319013HM13histocompatibility minor 13203151444231569543Human


Peak: (rs4911156)
Human AssemblyChrPosition (strand)Source
GRCh382031,546,015 - 31,546,016RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597252667GWAS1348741_Hplatelet count QTL GWAS1348741 (human)2e-10platelet quantity (VT:0003179)platelet count (CMO:0000029)203154601531546016Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1348741_H GCST90056183 Platelet count 235,256 European ancestry individuals A 0.398 2E-10 9.699 rs4911156 N/A platelet count (EFO:0004309)
 PMID:34469753
Database
Acc Id
Source(s)
GWAS Catalog GCST90056183 GWAS Catalog

Note Type Note Reference