GWAS1348244_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1348244_H (urate measurement, spine bone mineral density QTL GWAS1348244 (human)) Homo sapiens

Symbol: GWAS1348244_H
Name: urate measurement, spine bone mineral density QTL GWAS1348244 (human)
RGD ID: 597252170
Trait: urate measurement, spine bone mineral density
Measurement Type: blood uric acid level   (CMO:0000501)    
bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381270,426,170 - 70,426,171RGD_MAPPER_PIPELINEGRCh38
GRCh371270,819,950 - 70,819,951RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1348244_HHumanblood uric acid level  IAGPrs11178235405850206 GWAS_CATALOGPMID:34046847
GWAS1348244_HHumanbone mineral density  IAGPrs11178235405850206 GWAS_CATALOGPMID:34046847

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1348244_HHumanspine bone mineral density  IAGPrs11178235405850206 GWAS_CATALOGPMID:34046847
GWAS1348244_HHumanurate measurement  IAGPrs11178235405850206 GWAS_CATALOGPMID:34046847

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1343155KCNMB4potassium calcium-activated channel subfamily M regulatory beta subunit 4127036629070434292Human


Peak: (rs11178235)
Human AssemblyChrPosition (strand)Source
GRCh381270,426,170 - 70,426,171RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597252170GWAS1348244_Hurate measurement, spine bone mineral density QTL GWAS1348244 (human)0.000007urate measurement, spine bone mineral densitybone mineral density (CMO:0001226)127042617070426171Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1348244_H GCST012488 L1-L4 bone mineral density x serum urate levels interaction 2,207 men, 2,354 women ? NR 0.000007 5.155 rs11178235 0.462789 urate measurement (EFO:0004531)
spine bone mineral density (EFO:0007701)
 PMID:34046847
Database
Acc Id
Source(s)
GWAS Catalog GCST012488 GWAS Catalog

Note Type Note Reference