GWAS1346917_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346917_H (major depressive disorder QTL GWAS1346917 (human)) Homo sapiens

Symbol: GWAS1346917_H
Name: major depressive disorder QTL GWAS1346917 (human)
RGD ID: 597250843
Trait: major depressive disorder
LOD Score: Not Available
P Value: 6.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh387117,846,880 - 117,846,881RGD_MAPPER_PIPELINEGRCh38
GRCh377117,486,934 - 117,486,935RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1346917_HHumanmajor depressive disorder  IAGPrs6466627405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:37985818

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1346917_HHumanDepression  IAGPrs6466627405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:37985818

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353355CTTNBP2cortactin binding protein 27117710651117873441Human


Peak: (rs6466627)
Human AssemblyChrPosition (strand)Source
GRCh387117,846,880 - 117,846,881RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597250843GWAS1346917_Hmajor depressive disorder QTL GWAS1346917 (human)6e-11major depressive disorder7117846880117846881Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1346917_H GCST90449002 Lifetime major depressive disorder (AutoComplete Impute and observed) 337,126 European ancestry individuals ? NR 6E-11 10.222 rs6466627 0.0168245 PMID:37985818
Database
Acc Id
Source(s)
GWAS Catalog GCST90449002 GWAS Catalog

Note Type Note Reference