GWAS1346512_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1346512_H (major depressive disorder QTL GWAS1346512 (human)) Homo sapiens

Symbol: GWAS1346512_H
Name: major depressive disorder QTL GWAS1346512 (human)
RGD ID: 597250438
Trait: major depressive disorder
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381433,526,365 - 33,526,366RGD_MAPPER_PIPELINEGRCh38
GRCh371433,995,571 - 33,995,572RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1346512_HHumanmajor depressive disorder  IAGPrs8021255405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:37985818

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1346512_HHumanDepression  IAGPrs8021255405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:37985818

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1316218NPAS3neuronal PAS domain protein 3143293478533804173Human
151675448LOC124903299uncharacterized LOC124903299143351576833534632Human


Peak: (rs8021255)
Human AssemblyChrPosition (strand)Source
GRCh381433,526,365 - 33,526,366RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597250438GWAS1346512_Hmajor depressive disorder QTL GWAS1346512 (human)3e-09major depressive disorder143352636533526366Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1346512_H GCST90449001 Lifetime major depressive disorder (AutoComplete Impute) 269,962 European ancestry individuals ? NR 3E-9 8.523 rs8021255 0.0178046 PMID:37985818
Database
Acc Id
Source(s)
GWAS Catalog GCST90449001 GWAS Catalog

Note Type Note Reference