GWAS1344301_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1344301_H (neuroticism measurement QTL GWAS1344301 (human)) Homo sapiens

Symbol: GWAS1344301_H
Name: neuroticism measurement QTL GWAS1344301 (human)
RGD ID: 597248227
Trait: neuroticism measurement
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh387117,856,265 - 117,856,266RGD_MAPPER_PIPELINEGRCh38
GRCh377117,496,319 - 117,496,320RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1344301_HHumanneuroticism measurement  IAGPrs7776980405850206 GWAS_CATALOGPMID:33349686

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1353355CTTNBP2cortactin binding protein 27117710651117873441Human


Peak: (rs7776980)
Human AssemblyChrPosition (strand)Source
GRCh387117,856,265 - 117,856,266RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597426031GWAS1522105_Hdepressive symptom measurement QTL GWAS1522105 (human)0.0000004depressive symptom measurement7117856265117856266Human
597248227GWAS1344301_Hneuroticism measurement QTL GWAS1344301 (human)2e-10neuroticism measurement7117856265117856266Human
597248947GWAS1345021_Hneuroticism measurement QTL GWAS1345021 (human)1e-10neuroticism measurement7117856265117856266Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1344301_H GCST90027240 Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis) 170,911 European ancestry individuals ? NR 2E-10 9.699 rs7776980 N/A neuroticism measurement (EFO:0007660)
 PMID:33349686
GWAS1345021_H GCST90027242 Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis) 170,911 European ancestry individuals ? NR 1E-10 10 rs7776980 N/A neuroticism measurement (EFO:0007660)
 PMID:33349686
GWAS1522105_H GCST90461918 Depressive symptoms 99,057 British ancestry individuals T 0.3148 4E-7 6.398 rs7776980 0.02186 depressive symptom measurement (EFO:0007006)
 PMID:30718454
Database
Acc Id
Source(s)
GWAS Catalog GCST90027240 GWAS Catalog

Note Type Note Reference