GWAS1331664_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1331664_H (appendicular lean mass QTL GWAS1331664 (human)) Homo sapiens

Symbol: GWAS1331664_H
Name: appendicular lean mass QTL GWAS1331664 (human)
RGD ID: 597235590
Trait: appendicular lean mass
LOD Score: Not Available
P Value: 1.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381242,476,642 - 42,476,643RGD_MAPPER_PIPELINEGRCh38
GRCh371242,870,444 - 42,870,445RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1331664_HHumanappendicular lean mass  IAGPrs6582398405850206 GWAS_CATALOGPMID:33097823

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346789PRICKLE1prickle planar cell polarity protein 1124245675742589746Human


Peak: (rs6582398)
Human AssemblyChrPosition (strand)Source
GRCh381242,476,642 - 42,476,643RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597235590GWAS1331664_Happendicular lean mass QTL GWAS1331664 (human)1e-12appendicular lean mass124247664242476643Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1331664_H GCST90000025 Appendicular lean mass 450,243 European ancestry individuals T 0.6002 1E-12 12 rs6582398 0.014 appendicular lean mass (EFO:0004980)
 PMID:33097823
Database
Acc Id
Source(s)
GWAS Catalog GCST90000025 GWAS Catalog

Note Type Note Reference