GWAS1307521_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1307521_H (upper aerodigestive tract neoplasm QTL GWAS1307521 (human)) Homo sapiens

Symbol: GWAS1307521_H
Name: upper aerodigestive tract neoplasm QTL GWAS1307521 (human)
RGD ID: 597211447
Trait: upper aerodigestive tract neoplasm
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381433,544,515 - 33,544,516RGD_MAPPER_PIPELINEGRCh38
GRCh371434,013,721 - 34,013,722RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1307521_HHumanHead and Neck Neoplasms  IAGPrs8003466405850206 GWAS_CATALOGPMID:33667223

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1307521_HHumanupper aerodigestive tract neoplasm  IAGPrs8003466405850206 GWAS_CATALOGPMID:33667223

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1316218NPAS3neuronal PAS domain protein 3143293478533804173Human


Peak: (rs8003466)
Human AssemblyChrPosition (strand)Source
GRCh381433,544,515 - 33,544,516RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597211447GWAS1307521_Hupper aerodigestive tract neoplasm QTL GWAS1307521 (human)0.000003upper aerodigestive tract neoplasm143354451533544516Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1307521_H GCST012213 Aerodigestive squamous cell cancer (pleiotropy) 7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls A 0.19 0.000003 5.523 rs8003466 0.92 upper aerodigestive tract neoplasm (EFO:0004284)
 PMID:33667223
Database
Acc Id
Source(s)
GWAS Catalog GCST012213 GWAS Catalog

Note Type Note Reference