GWAS1297759_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1297759_H (memory performance, sex interaction measurement QTL GWAS1297759 (human)) Homo sapiens

Symbol: GWAS1297759_H
Name: memory performance, sex interaction measurement QTL GWAS1297759 (human)
RGD ID: 597201685
Trait: memory performance, sex interaction measurement
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384109,129,261 - 109,129,262RGD_MAPPER_PIPELINEGRCh38
GRCh374110,050,417 - 110,050,418RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1297759_HHumanmemory performance  IAGPrs13434555405850206 GWAS_CATALOGPMID:37984853
GWAS1297759_HHumansex interaction measurement  IAGPrs13434555405850206 GWAS_CATALOGPMID:37984853

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603375COL25A1collagen type XXV alpha 1 chain4108808725109302658Human


Peak: (rs13434555)
Human AssemblyChrPosition (strand)Source
GRCh384109,129,261 - 109,129,262RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human
596984296GWAS1103815_Hmemory performance, sex interaction measurement QTL GWAS1103815 (human)0.000004memory performance, sex interaction measurement4109129261109129262Human
597201685GWAS1297759_Hmemory performance, sex interaction measurement QTL GWAS1297759 (human)0.000004memory performance, sex interaction measurement4109129261109129262Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1297759_H GCST90448463 Memory decline x sex interaction 24,216 European ancestry individuals, 3,367 African ancestry individuals ? NR 0.000004 5.398 rs13434555 0.007544 memory performance (EFO:0004874)
sex interaction measurement (EFO:0008343)
 PMID:37984853
Database
Acc Id
Source(s)
GWAS Catalog GCST90448463 GWAS Catalog

Note Type Note Reference