GWAS1292493_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1292493_H (memory performance QTL GWAS1292493 (human)) Homo sapiens

Symbol: GWAS1292493_H
Name: memory performance QTL GWAS1292493 (human)
RGD ID: 597196419
Trait: memory performance
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,179,143 - 3,179,144RGD_MAPPER_PIPELINEGRCh38
GRCh37123,288,309 - 3,288,310RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1292493_HHumanmemory performance  IAGPrs879188405850206 GWAS_CATALOGPMID:37984853

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602896TSPAN9tetraspanin 91230773793286559Human


Peak: (rs879188)
Human AssemblyChrPosition (strand)Source
GRCh38123,179,143 - 3,179,144RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596980397GWAS1099916_Hmemory performance QTL GWAS1099916 (human)0.000007memory performance1231791433179144Human
597196419GWAS1292493_Hmemory performance QTL GWAS1292493 (human)0.000007memory performance1231791433179144Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1292493_H GCST90448422 Baseline memory in impaired cognition 373 African ancestry males ? NR 0.000007 5.155 rs879188 0.338939 memory performance (EFO:0004874)
 PMID:37984853
Database
Acc Id
Source(s)
GWAS Catalog GCST90448422 GWAS Catalog

Note Type Note Reference