GWAS1272537_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1272537_H (interleukin-22 measurement QTL GWAS1272537 (human)) Homo sapiens

Symbol: GWAS1272537_H
Name: interleukin-22 measurement QTL GWAS1272537 (human)
RGD ID: 597176463
Trait: blood interleukin amount   (VT:0008588)    
LOD Score: Not Available
P Value: 5.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381196,958,661 - 196,958,662RGD_MAPPER_PIPELINEGRCh38
GRCh371196,927,791 - 196,927,792RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1272537_HHumanblood interleukin amount  IAGPrs2026547405850206 GWAS_CATALOGPMID:34648354

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1272537_HHumaninterleukin-22 measurement  IAGPrs2026547405850206 GWAS_CATALOGPMID:34648354

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606035CFHR2complement factor H related 21196943738196959622Human


Peak: (rs2026547)
Human AssemblyChrPosition (strand)Source
GRCh381196,958,661 - 196,958,662RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597176463GWAS1272537_Hinterleukin-22 measurement QTL GWAS1272537 (human)5e-17blood interleukin amount (VT:0008588)1196958661196958662Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1272537_H GCST90248058 Interleukin-22 levels 10,708 European ancestry individuals A 0.53 5E-17 16.302 rs2026547 0.113 interleukin-22 measurement (EFO:0020498)
 PMID:34648354
Database
Acc Id
Source(s)
GWAS Catalog GCST90248058 GWAS Catalog

Note Type Note Reference