GWAS1267600_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1267600_H (chronotype measurement, sun exposure measurement QTL GWAS1267600 (human)) Homo sapiens

Symbol: GWAS1267600_H
Name: chronotype measurement, sun exposure measurement QTL GWAS1267600 (human)
RGD ID: 597171526
Trait: chronotype measurement, sun exposure measurement
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38637,415,159 - 37,415,160RGD_MAPPER_PIPELINEGRCh38
GRCh37637,382,935 - 37,382,936RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1267600_HHumanchronotype measurement  IAGPrs185858798405850206 GWAS_CATALOGPMID:36519390
GWAS1267600_HHumansun exposure measurement  IAGPrs185858798405850206 GWAS_CATALOGPMID:36519390

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs185858798)
Human AssemblyChrPosition (strand)Source
GRCh38637,415,159 - 37,415,160RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
597171526GWAS1267600_Hchronotype measurement, sun exposure measurement QTL GWAS1267600 (human)0.0000002chronotype measurement, sun exposure measurement63741515937415160Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1267600_H GCST90267308 Chronotype x daytime light exposure interaction 280,897 British ancestry individuals ? NR 2E-7 6.699 rs185858798 0.412087 chronotype measurement (EFO:0008328)
sun exposure measurement (EFO:0010729)
 PMID:36519390
Database
Acc Id
Source(s)
GWAS Catalog GCST90267308 GWAS Catalog

Note Type Note Reference