GWAS1266275_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1266275_H (smoking initiation QTL GWAS1266275 (human)) Homo sapiens

Symbol: GWAS1266275_H
Name: smoking initiation QTL GWAS1266275 (human)
RGD ID: 597170201
Trait: smoking initiation
LOD Score: Not Available
P Value: 5.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385161,490,579 - 161,490,580RGD_MAPPER_PIPELINEGRCh38
GRCh375160,917,585 - 160,917,586RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1266275_HHumansmoking initiation  IAGPrs12153421405850206 GWAS_CATALOGPMID:36477530

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
735355GABRB2gamma-aminobutyric acid type A receptor subunit beta25161288436161548404Human


Peak: (rs12153421)
Human AssemblyChrPosition (strand)Source
GRCh385161,490,579 - 161,490,580RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597170201GWAS1266275_Hsmoking initiation QTL GWAS1266275 (human)5e-21smoking initiation5161490579161490580Human
2289409BW320_HBody weight QTL 320 (human)3.50.0002Body weightlean mass5160925164181538259Human
597278479GWAS1374553_Hinsomnia QTL GWAS1374553 (human)4e-10insomnia5161490579161490580Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1266275_H GCST90243985 Smoking initiation 3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals G 0.241 5E-21 20.302 rs12153421 0.00856 smoking initiation (EFO:0005670)
 PMID:36477530
GWAS1374553_H GCST90131903 Insomnia 390,751 European ancestry female cases, 1,018,386 European ancestry female controls A NR 4E-10 9.398 rs12153421 0.008 insomnia (EFO:0004698)
 PMID:35835914
Database
Acc Id
Source(s)
GWAS Catalog GCST90243985 GWAS Catalog

Note Type Note Reference