GWAS1255495_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1255495_H (fatty acid measurement QTL GWAS1255495 (human)) Homo sapiens

Symbol: GWAS1255495_H
Name: fatty acid measurement QTL GWAS1255495 (human)
RGD ID: 597159421
Trait: fatty acid measurement
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381494,380,925 - 94,380,926RGD_MAPPER_PIPELINEGRCh38
GRCh371494,847,262 - 94,847,263RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1255495_HHumanfatty acid measurement  IAGPrs17580405850206 GWAS_CATALOGPMID:35213538

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1349357SERPINA1serpin family A member 1149437674794390635Human


Peak: (rs17580)
Human AssemblyChrPosition (strand)Source
GRCh381494,380,925 - 94,380,926RGD_MAPPER_PIPELINE


1 to 10 of 87 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597301402GWAS1397476_H15-hydroxyprostaglandin dehydrogenase [NAD(+)] measurement QTL GWAS1397476 (human)1e-3715-hydroxyprostaglandin dehydrogenase [NAD(+)] measurement149438092594380926Human
597121687GWAS1217761_Hblood protein measurement QTL GWAS1217761 (human)1e-30blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)149438092594380926Human
597176730GWAS1272804_H15-hydroxyprostaglandin dehydrogenase [NAD(+)] measurement QTL GWAS1272804 (human)3e-3115-hydroxyprostaglandin dehydrogenase [NAD(+)] measurement149438092594380926Human
597105941GWAS1202015_Hsex hormone-binding globulin measurement QTL GWAS1202015 (human)9e-18sex hormone-binding globulin measurement149438092594380926Human
597319449GWAS1415523_Hlow density lipoprotein cholesterol measurement QTL GWAS1415523 (human)1e-40low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)149438092594380926Human
597176732GWAS1272806_Hprotein measurement QTL GWAS1272806 (human)3e-13protein measurement149438092594380926Human
597177118GWAS1273192_Hprotein measurement QTL GWAS1273192 (human)2e-84protein measurement149438092594380926Human
597051793GWAS1147867_Halpha fetoprotein measurement QTL GWAS1147867 (human)8e-38blood alpha-fetoprotein amount (VT:0010776)149438092594380926Human
597176336GWAS1272410_Hmelanoma-associated antigen 3 measurement QTL GWAS1272410 (human)7e-97melanoma-associated antigen 3 measurement149438092594380926Human
597593367GWAS1650227_Hplatelet count QTL GWAS1650227 (human)7e-27platelet quantity (VT:0003179)platelet count (CMO:0000029)149438092594380926Human

1 to 10 of 87 rows


1 to 20 of 110 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1255495_H GCST90092929 Ratio of monounsaturated fatty acids to total fatty acids 115,006 European ancestry individuals T 0.952133 4E-8 7.398 rs17580 0.0509775 fatty acid measurement (EFO:0005110)
 PMID:35213538
GWAS537275_H GCST004603 Platelet count 166,066 European ancestry individuals A 0.0482 4E-9 8.398 rs17580 0.05004851 platelet count (EFO:0004309)
 PMID:27863252
GWAS1637365_H GCST90479662 low density lipoprotein cholesterol (LDLC, minimum, inv-norm transformed) 113,217 African American or Afro-Caribbean individuals, 54,983 Hispanic or Latin American individuals, 6,010 East Asian ancestry individuals, 404,745 European ancestry individuals T 0.9635 4E-14 13.398 rs17580 0.05058 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:39024449
GWAS1119034_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T 0.959 3E-8 7.523 rs17580 0.066 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS1119035_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T NR 9E-11 10.046 rs17580 0.073 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS1136599_H GCST010204 Low density lipoprotein cholesterol levels 324,708 British ancestry individuals ? NR 2E-15 14.699 rs17580 0.0472 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32154731
GWAS1649688_H GCST90476296 platelet count (maximum, inv-norm transformed) 406,601 European ancestry individuals T 0.9568 8E-25 24.097 rs17580 0.07136 platelet count (EFO:0004309)
 PMID:39024449
GWAS1650227_H GCST90476302 platelet count (minimum, inv-norm transformed) 407,168 European ancestry individuals T 0.9568 7E-27 26.155 rs17580 0.07131 platelet count (EFO:0004309)
 PMID:39024449
GWAS1147867_H GCST009651 Serum alpha-fetoprotein levels 22,686 Icelandic ancestry individuals A 0.033 8E-38 37.097 rs17580 0.38 alpha fetoprotein measurement (EFO:0010583)
 PMID:31666285
GWAS1650470_H GCST90476299 platelet count (mean, inv-norm transformed) 407,021 European ancestry individuals T 0.9568 2E-36 35.699 rs17580 0.08725 platelet count (EFO:0004309)
 PMID:39024449
GWAS1166856_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T 0.959 3E-7 6.523 rs17580 0.06 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1166857_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals T NR 1E-9 9 rs17580 0.067 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1717346_H GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals A NR 8E-63 62.097 rs17580 0.0985 serum albumin amount (OBA:2050068)
 PMID:33462484
GWAS1179848_H GCST90002357 Platelet count 542,827 European ancestry individuals A 0.04653 5E-16 15.302 rs17580 0.035466 platelet count (EFO:0004309)
 PMID:32888493
GWAS1181909_H GCST90002361 Platelet count 721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals A 0.0449526 4E-13 12.398 rs17580 N/A platelet count (EFO:0004309)
 PMID:32888493
GWAS1193269_H GCST90012113 Total testosterone levels 194,453 European ancestry men A 0.04824799999999996 2E-12 11.699 rs17580 0.048637 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1193982_H GCST90012111 Sex hormone-binding globulin levels 370,125 European ancestry individuals A 0.048223000000000016 4E-35 34.398 rs17580 0.0258533 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1196213_H GCST90012110 Sex hormone-binding globulin levels adjusted for BMI 368,929 European ancestry individuals A 0.048223000000000016 2E-42 41.699 rs17580 0.0257707 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1727347_H GCST90315602 PARP1/TCL1A protein level ratio 43,509 European ancestry individuals ? NR 5E-64 63.302 rs17580 0.26876 PARP1/TCL1A protein level ratio in blood (OBA:2055160)
 PMID:38412862
GWAS1197885_H GCST90002412 Low density lipoprotein cholesterol levels 431,167 European ancestry individuals T 0.952305 4E-30 29.398 rs17580 0.0514106 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32493714
1 to 20 of 110 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90092929 GWAS Catalog

Note Type Note Reference