GWAS1253854_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1253854_H (lifestyle measurement, depressive symptom measurement QTL GWAS1253854 (human)) Homo sapiens

Symbol: GWAS1253854_H
Name: lifestyle measurement, depressive symptom measurement QTL GWAS1253854 (human)
RGD ID: 597157780
Trait: lifestyle measurement, depressive symptom measurement
LOD Score: Not Available
P Value: 1.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381207,479,647 - 207,479,648RGD_MAPPER_PIPELINEGRCh38
GRCh371207,652,992 - 207,652,993RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1253854_HHumandepressive symptom measurement  IAGPrs4317805405850206 GWAS_CATALOGPMID:34877740
GWAS1253854_HHumanlifestyle measurement  IAGPrs4317805405850206 GWAS_CATALOGPMID:34877740

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1320753CR2complement C3d receptor 21207454328207489892Human


Peak: (rs4317805)
Human AssemblyChrPosition (strand)Source
GRCh381207,479,647 - 207,479,648RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597157780GWAS1253854_Hlifestyle measurement, depressive symptom measurement QTL GWAS1253854 (human)0.0000001lifestyle measurement, depressive symptom measurement1207479647207479648Human
597067387GWAS1163461_Hsystemic scleroderma QTL GWAS1163461 (human)0.000002systemic scleroderma1207479647207479648Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1253854_H GCST90101750 Depression severity x hours spent watching television interaction 488,377 British ancestry individuals ? NR 1E-7 7 rs4317805 0.214668 lifestyle measurement (EFO:0010724)
depressive symptom measurement (EFO:0007006)
 PMID:34877740
GWAS1163461_H GCST005554 Systemic sclerosis 1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls ? NR 0.000002 5.699 rs4317805 N/A systemic scleroderma (EFO:0000717)
 PMID:29293537
Database
Acc Id
Source(s)
GWAS Catalog GCST90101750 GWAS Catalog

Note Type Note Reference