GWAS1250138_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1250138_H (cystatin C measurement, diet measurement QTL GWAS1250138 (human)) Homo sapiens

Symbol: GWAS1250138_H
Name: cystatin C measurement, diet measurement QTL GWAS1250138 (human)
RGD ID: 597154064
Trait: eating behavior trait   (VT:0001431)    
Measurement Type: blood cystatin C level   (CMO:0002777)    
food intake measurement   (CMO:0000772)    
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh387112,186,221 - 112,186,222RGD_MAPPER_PIPELINEGRCh38
GRCh377111,826,276 - 111,826,277RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1250138_HHumanblood cystatin C level  IAGPrs17159341405850206 GWAS_CATALOGPMID:38990837
GWAS1250138_HHumanfood intake measurement  IAGPrs17159341405850206 GWAS_CATALOGPMID:38990837

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1250138_HHumaneating behavior trait  IAGPrs17159341405850206Based on the EFO term IDGWAS_CATALOGPMID:38990837

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1250138_HHumancystatin C measurement  IAGPrs17159341405850206 GWAS_CATALOGPMID:38990837
GWAS1250138_HHumandiet measurement  IAGPrs17159341405850206 GWAS_CATALOGPMID:38990837

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350295DOCK4dedicator of cytokinesis 47111726110112206399Human


Peak: (rs17159341)
Human AssemblyChrPosition (strand)Source
GRCh387112,186,221 - 112,186,222RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596965554GWAS1085073_Hcystatin C measurement, diet measurement QTL GWAS1085073 (human)0.000003cystatin C measurement, diet measurement7112186221112186222Human
596965043GWAS1084562_Hglomerular filtration rate, diet measurement QTL GWAS1084562 (human)0.0000009glomerular filtration rate, diet measurement7112186221112186222Human
597154064GWAS1250138_Hcystatin C measurement, diet measurement QTL GWAS1250138 (human)0.000003eating behavior trait (VT:0001431)food intake measurement (CMO:0000772)7112186221112186222Human
596965789GWAS1085308_Hglomerular filtration rate, diet measurement QTL GWAS1085308 (human)0.0000003glomerular filtration rate, diet measurement7112186221112186222Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1250138_H GCST90161184 Cystatin C levels x vegetarianism interaction 147,248 European ancestry individuals A 0.855593 0.000003 5.523 rs17159341 0.183834 cystatin C measurement (EFO:0004617)
diet measurement (EFO:0008111)
 PMID:38990837
GWAS1757226_H GCST90161201 Estimated glomerular filtration rate x vegetarianism interaction 147,065 European ancestry individuals A 0.855576 3E-7 6.523 rs17159341 0.198878 diet measurement (EFO:0008111)
glomerular filtration rate (OBA:0003747)
 PMID:38990837
GWAS1759035_H GCST90161231 Estimated glomerular filtration rate (adjusted for BMI) x vegetarianism interaction 146,742 European ancestry individuals A 0.855546 9E-7 6.046 rs17159341 0.183532 diet measurement (EFO:0008111)
glomerular filtration rate (OBA:0003747)
 PMID:38990837
Database
Acc Id
Source(s)
GWAS Catalog GCST90161184 GWAS Catalog

Note Type Note Reference