GWAS1218636_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1218636_H (CCL21 measurement QTL GWAS1218636 (human)) Homo sapiens

Symbol: GWAS1218636_H
Name: CCL21 measurement QTL GWAS1218636 (human)
RGD ID: 597122562
Trait: CCL21 measurement
LOD Score: Not Available
P Value: 9.0E-27
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383132,512,108 - 132,512,109RGD_MAPPER_PIPELINEGRCh38
GRCh373132,230,952 - 132,230,953RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1218636_HHumanCCL21 measurement  IAGPrs78677447405850206 GWAS_CATALOGPMID:35078996

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317589DNAJC13DnaJ heat shock protein family (Hsp40) member C133132417502132539032Human


Peak: (rs78677447)
Human AssemblyChrPosition (strand)Source
GRCh383132,512,108 - 132,512,109RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597122562GWAS1218636_HCCL21 measurement QTL GWAS1218636 (human)9e-27CCL21 measurement3132512108132512109Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1218636_H GCST90087955 Serum levels of protein CCL21 5,365 Icelandic ancestry individuals A 0.01812 9E-27 26.046 rs78677447 0.750176 CCL21 measurement (EFO:0009416)
 PMID:35078996
Database
Acc Id
Source(s)
GWAS Catalog GCST90087955 GWAS Catalog

Note Type Note Reference